View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18770_low_2 (Length: 558)

Name: NF18770_low_2
Description: NF18770
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18770_low_2
NF18770_low_2
[»] chr5 (5 HSPs)
chr5 (276-538)||(4383622-4383884)
chr5 (15-268)||(4383938-4384191)
chr5 (288-375)||(4768899-4768984)
chr5 (68-167)||(36849605-36849704)
chr5 (373-421)||(4385434-4385482)
[»] chr2 (5 HSPs)
chr2 (49-173)||(16230914-16231041)
chr2 (26-183)||(34688665-34688825)
chr2 (26-183)||(34711077-34711237)
chr2 (20-109)||(35546696-35546785)
chr2 (69-123)||(35564747-35564801)
[»] chr3 (2 HSPs)
chr3 (74-173)||(46520169-46520268)
chr3 (68-164)||(49879597-49879693)


Alignment Details
Target: chr5 (Bit Score: 255; Significance: 1e-141; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 255; E-Value: 1e-141
Query Start/End: Original strand, 276 - 538
Target Start/End: Complemental strand, 4383884 - 4383622
Alignment:
Q  276 catctttgacagcagagaagctgcattgtagtgtttcgattatatgcaattcttagtgttatagggtataatgttgtggttaaatactacaattccattg 375  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4383884 catctttgacagcagagaagctgcattgtagtttttcgattatatgcaattcttagtgttatagggtataatgttgtggttaaatactacaattccattg 4383785  T
Q  376 caagattaccttcctgtgctcgttgcacttttagctctactcgctttgctatgcttgatcgactatcagtgaatacaagtcgtacaccgcaggtcactgc 475  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  4383784 caagattaccttcctgtgctcgttgcacttttagctctactcgctttgctatgcttgatcgactatcagtgaatacaagtcgtaaaccgcaggtcactgc 4383685  T
Q  476 ccagatgtaatgatgaaaacagaatcatttgcaaaacaatttaggttttatagctgatagaag 538  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4383684 ccagatgtaatgatgaaaacagaatcatttgcaaaacaatttaggttttatagctgatagaag 4383622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 238; E-Value: 1e-131
Query Start/End: Original strand, 15 - 268
Target Start/End: Complemental strand, 4384191 - 4383938
Alignment:
Q  15 atattaaccgacacattgttgtttatctcattagctgtggcatttgaagactctgtttgcttctcttgatcatcttttggctcaacgaattcctttttag 114  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4384191 atattaaccgacacattgttgtttatctcattagctgtggcatttgaagactctgtttgcttctcttgatcatcttttggctcaacgaattcctttttag 4384092  T
Q  115 catctatccccttctggttgaacccaattctatcttgtatgtcgtcttcatcatcatcaatactaataagtttcatcttgagagtaggcattcattctgt 214  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||    
T  4384091 catctatccccttctggttgaacccaattctatcttgtatgtcgtcttcatcatcatcaatactaataagttccttcttgagagtaggcattcattctgt 4383992  T
Q  215 tgattgccactgagtttctgttgtctatcatagtcataccaaagattacggagt 268  Q
    |||||||||||||||||||||||||||||||||||||| |||| ||||||||||    
T  4383991 tgattgccactgagtttctgttgtctatcatagtcatagcaaacattacggagt 4383938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 288 - 375
Target Start/End: Complemental strand, 4768984 - 4768899
Alignment:
Q  288 cagagaagctgcattgtagtgtttcgattatatgcaattcttagtgttatagggtataatgttgtggttaaatactacaattccattg 375  Q
    ||||||||||||||||| || ||||||||||  ||||||||||||||||||||||| |||| ||||||||||||||||||||| ||||    
T  4768984 cagagaagctgcattgttgtttttcgattat--gcaattcttagtgttatagggtacaatgctgtggttaaatactacaattcgattg 4768899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 68 - 167
Target Start/End: Original strand, 36849605 - 36849704
Alignment:
Q  68 tgtttgcttctcttgatcatcttttggctcaacgaattcctttttagcatctatccccttctggttgaacccaattctatcttgtatgtcgtcttcatca 167  Q
    ||||||||||||||| ||| |||||||||||  || |||||||| ||||||| |||||| ||||||||| |||||||  |||||| |||| ||| |||||    
T  36849605 tgtttgcttctcttgttcagcttttggctcactgacttccttttgagcatctgtcccctcctggttgaatccaattccttcttgtttgtcctctacatca 36849704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 373 - 421
Target Start/End: Complemental strand, 4385482 - 4385434
Alignment:
Q  373 ttgcaagattaccttcctgtgctcgttgcacttttagctctactcgctt 421  Q
    |||||||||||||||| |||||||||||||||||||||||| |||||||    
T  4385482 ttgcaagattaccttcatgtgctcgttgcacttttagctctgctcgctt 4385434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 58; Significance: 4e-24; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 49 - 173
Target Start/End: Complemental strand, 16231041 - 16230914
Alignment:
Q  49 ctgtggcatttgaagactctgtttgcttctcttgatcatcttttggctcaacgaattcctttttagcatctatcc---ccttctggttgaacccaattct 145  Q
    |||||| |||||| || ||  |||||||||||||||| ||||||||||||||||||||||||||||||| |||||   ||| ||||||||||||| ||||    
T  16231041 ctgtggtatttgaggattcgatttgcttctcttgatcgtcttttggctcaacgaattcctttttagcatttatcccctcctgctggttgaacccagttct 16230942  T
Q  146 atcttgtatgtcgtcttcatcatcatca 173  Q
      || |||||||  ||||||||||||||    
T  16230941 gcctcgtatgtcaacttcatcatcatca 16230914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 26 - 183
Target Start/End: Complemental strand, 34688825 - 34688665
Alignment:
Q  26 cacattgttgtttatctcattagctgtggcatttgaagactctgtttgcttctcttgatcatcttttggctcaacgaattcctttttagcatctatcccc 125  Q
    |||||| ||||| |||||| ||  ||||| |||||| |||||  ||||||||||||||||||||||||||||||| | ||||| |||||||| |||||||    
T  34688825 cacattattgttcatctcactaattgtggtatttgaggactcgatttgcttctcttgatcatcttttggctcaacaagttcctgtttagcatttatcccc 34688726  T
Q  126 ttc---tggttgaacccaattctatcttgtatgtcgtcttcatcatcatcaatactaataa 183  Q
    | |   |||||||| ||| ||||  || |||||||   |||||||||||||||| ||||||    
T  34688725 tcctgttggttgaatccagttctgcctcgtatgtcaatttcatcatcatcaataataataa 34688665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 26 - 183
Target Start/End: Complemental strand, 34711237 - 34711077
Alignment:
Q  26 cacattgttgtttatctcattagctgtggcatttgaagactctgtttgcttctcttgatcatcttttggctcaacgaattcctttttagcatctatcccc 125  Q
    |||||| ||||| |||||| ||  ||||| |||||| |||||  ||||||||||||||||||||||||||||||| | ||||| |||||||| |||||||    
T  34711237 cacattattgttcatctcactaattgtggtatttgaggactcgatttgcttctcttgatcatcttttggctcaacaagttcctgtttagcatttatcccc 34711138  T
Q  126 ttc---tggttgaacccaattctatcttgtatgtcgtcttcatcatcatcaatactaataa 183  Q
    | |   |||||||| ||| ||||  || |||||||   |||||||||||||||| ||||||    
T  34711137 tcctgttggttgaatccagttctgcctcgtatgtcaatttcatcatcatcaataataataa 34711077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 20 - 109
Target Start/End: Original strand, 35546696 - 35546785
Alignment:
Q  20 aaccgacacattgttgtttatctcattagctgtggcatttgaagactctgtttgcttctcttgatcatcttttggctcaacgaattcctt 109  Q
    ||||| ||||||||||||||||||||||  ||| | |||| | |||||  ||| |||||||||||||||||| |||||||| ||||||||    
T  35546696 aaccgccacattgttgtttatctcattaattgtcgtatttaaggactcgattttcttctcttgatcatctttgggctcaacaaattcctt 35546785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 69 - 123
Target Start/End: Original strand, 35564747 - 35564801
Alignment:
Q  69 gtttgcttctcttgatcatcttttggctcaacgaattcctttttagcatctatcc 123  Q
    |||| ||||||||||||||||||||||||||| |||| ||| ||||||| |||||    
T  35564747 gttttcttctcttgatcatcttttggctcaacaaattgcttcttagcatttatcc 35564801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 36; Significance: 0.00000000005; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 74 - 173
Target Start/End: Complemental strand, 46520268 - 46520169
Alignment:
Q  74 cttctcttgatcatcttttggctcaacgaattcctttttagcatctatccccttctggttgaacccaattctatcttgtatgtcgtcttcatcatcatca 173  Q
    ||||||||||||| ||||||| |||   | || || |||||| ||| ||||||  |||||||| ||||||||  |||||||||| |||||||||||||||    
T  46520268 cttctcttgatcaacttttggttcactcactttctctttagcgtctgtcccctcgtggttgaatccaattcttccttgtatgtcctcttcatcatcatca 46520169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 68 - 164
Target Start/End: Complemental strand, 49879693 - 49879597
Alignment:
Q  68 tgtttgcttctcttgatcatcttttggctcaacgaattcctttttagcatctatccccttctggttgaacccaattctatcttgtatgtcgtcttca 164  Q
    |||||||||||||||||||||||||| ||||| || ||| |||||| | | |||||| | |||| |||| ||| ||||  |||| ||||| ||||||    
T  49879693 tgtttgcttctcttgatcatcttttgactcaatgatttcttttttatcgtttatcccatcctggatgaatccagttctgccttgaatgtcctcttca 49879597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University