View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18770_low_3 (Length: 389)
Name: NF18770_low_3
Description: NF18770
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18770_low_3 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 299; Significance: 1e-168; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 1 - 311
Target Start/End: Complemental strand, 41497532 - 41497222
Alignment:
| Q |
1 |
ctatttcctttgtttcaaatccaattctcctatgtagcctgaattagtgaatcctaatacagggccatagaagaagaaactccatttcctttctcatctg |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
41497532 |
ctatttcctttgtttcaaatccaattctcctatgtagtctgaattagtgaatcctaatacagggccatagaagaagaaactccatttcctttctcatatg |
41497433 |
T |
|
| Q |
101 |
atatgatacatatgaggagctctagaacaaaaagtaatactaaagagaagatgagaacctgcagtcctggaacaccgttggtcaataggagagtgatcat |
200 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41497432 |
atatgatatatatgaggagctctagaacaaaaagtaatactaaagagaagatgagaacctgcagtcctggaacaccgttggtcaataggagagtgatcat |
41497333 |
T |
|
| Q |
201 |
gccataatctgtatgaggagaggcaccatatttctcttcacgagatcccaattcacctgatataattcacattataaaaggttacatagattatattagt |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41497332 |
gccataatctgtatgaggagaggcaccatatttctcttcacgagatcccaattcacctgatataattcacattataaaaggttacatagattatattagt |
41497233 |
T |
|
| Q |
301 |
tggttttcttt |
311 |
Q |
| |
|
||||||||||| |
|
|
| T |
41497232 |
tggttttcttt |
41497222 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 151 - 267
Target Start/End: Complemental strand, 41491149 - 41491033
Alignment:
| Q |
151 |
atgagaacctgcagtcctggaacaccgttggtcaataggagagtgatcatgccataatctgtatgaggagaggcaccatatttctcttcacgagatccca |
250 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||| |||||||||| || |||||||| || ||||| |
|
|
| T |
41491149 |
atgagaacctgcagtcctggaacaccgttggttaataggagagtgatcatgccataatctgaatgagcagaggcaccacatatctcttcattaggtccca |
41491050 |
T |
|
| Q |
251 |
attcacctgatataatt |
267 |
Q |
| |
|
|||||||| || ||||| |
|
|
| T |
41491049 |
attcacctaatgtaatt |
41491033 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 148 - 228
Target Start/End: Complemental strand, 41483306 - 41483226
Alignment:
| Q |
148 |
aagatgagaacctgcagtcctggaacaccgttggtcaataggagagtgatcatgccataatctgtatgaggagaggcacca |
228 |
Q |
| |
|
|||||| ||||||| |||||||||||||| ||||| | |||||||||||||||||||||||||| ||||| |||||||||| |
|
|
| T |
41483306 |
aagatgtgaacctgtagtcctggaacaccattggtgattaggagagtgatcatgccataatctgaatgagcagaggcacca |
41483226 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 332 - 376
Target Start/End: Complemental strand, 41497198 - 41497154
Alignment:
| Q |
332 |
cttgactctactaataaagtacggcagaaaaaactttagaataat |
376 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
41497198 |
cttgactctactaataaagtacggcagaaaaaactttagattaat |
41497154 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University