View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18770_low_4 (Length: 349)
Name: NF18770_low_4
Description: NF18770
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18770_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 294; Significance: 1e-165; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 17 - 342
Target Start/End: Complemental strand, 41497846 - 41497521
Alignment:
| Q |
17 |
attttttgtgtgtgcttagacacatgttagactcttattattttagtcgactagttaaacaaactaattggataatacttttactctaccttgggggaga |
116 |
Q |
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| T |
41497846 |
attttttgtgtgtgcttagacacatgttagactcttattattttagtcgactagttaaacaaactaattggataatacttttactctaccttgggggaga |
41497747 |
T |
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| Q |
117 |
agattcgctgcaaaattgtaaggaaaggttaagccatgagatttataacctaggtgagtcttagaatttggtttgaacttaactcaacacttcactctcg |
216 |
Q |
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|||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||| ||| |
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| T |
41497746 |
agattcactccaaaattgtaaggaaaggttaagccatgagatttataacctaggtgagtcttagaatttggtttgaacttaattcaacccttcactttcg |
41497647 |
T |
|
| Q |
217 |
taccaatttaaaatttgtgtcgagttaaactcaacccttacaaaatcagggtgcaagaaaatacggtacacgagtaactaatcctgaaattgtgttcttt |
316 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||| |
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| T |
41497646 |
taccaatttaaaatttgtgtcgagttagactcaacccttacaaaatcagggtgcaagaaaatacggcacacgagtatctaatcctgaaattgtgttcttt |
41497547 |
T |
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| Q |
317 |
tatgtttatttttactatttcctttg |
342 |
Q |
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|||||||||||||||||||||||||| |
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| T |
41497546 |
tatgtttatttttactatttcctttg |
41497521 |
T |
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