View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18770_low_5 (Length: 349)
Name: NF18770_low_5
Description: NF18770
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18770_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 252; Significance: 1e-140; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 16 - 342
Target Start/End: Original strand, 54863297 - 54863628
Alignment:
| Q |
16 |
caacattgacttcacgtgtgaacaattatgtatcctagattgtcacttacgtcaattttaattaaaagtgctttattaacgtcgactaatacggacttat |
115 |
Q |
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| T |
54863297 |
caacattgacttcacgtgtgaacaattatgtatcgtagattgtcacttacatcaattttaattaaaagtgctttaataatgttgactaatgcggacttat |
54863396 |
T |
|
| Q |
116 |
gaatatctatcaggtgtagagataaaagagtgattctgttaaaaaggtaaaatcgaaatgatagtagataataagtgtttgagtggatcttagatatttt |
215 |
Q |
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|||| ||||||||||||||||| |||||||||||| |||||||| |||||||||||||||||||||||||||||||| |||||||| | | ||||||||| |
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| T |
54863397 |
gaatgtctatcaggtgtagagacaaaagagtgattatgttaaaagggtaaaatcgaaatgatagtagataataagtgcttgagtgggtgtcagatatttt |
54863496 |
T |
|
| Q |
216 |
attgaaccttttgttataatagggctaaggatag-----tttattttatttaagtctcactatatatattaataacatttgtattcttaaacctttgtca |
310 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54863497 |
attgaaccttttgttataatagggctaaggatagtttattttattttatttaagtctcactatatatattaataacatttgtattcttaaacctttgtca |
54863596 |
T |
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| Q |
311 |
attttattgttttgttctctcttttctctgat |
342 |
Q |
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|||||||||||||||||||||||| ||||||| |
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| T |
54863597 |
attttattgttttgttctctctttcctctgat |
54863628 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 223 - 333
Target Start/End: Complemental strand, 20014321 - 20014213
Alignment:
| Q |
223 |
cttttgttataatagggctaaggatagtttattttatttaagtctcactatatatattaataacatttgtattcttaaacctttgtcaattttattgttt |
322 |
Q |
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||||||||||||| ||| ||| | ||||||| |||||||| | ||||||||||| || ||| |||| |||||||||| || ||||| ||| |||||| |
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| T |
20014321 |
cttttgttataattgggttaatggtagtttaatttatttatatttcactatatat--tagtaatatttatattcttaaattttggtcaactttgttgttt |
20014224 |
T |
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| Q |
323 |
tgttctctctt |
333 |
Q |
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||||||||||| |
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| T |
20014223 |
tgttctctctt |
20014213 |
T |
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