View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18771_low_1 (Length: 341)
Name: NF18771_low_1
Description: NF18771
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18771_low_1 |
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Alignment Details
Target: chr7 (Bit Score: 283; Significance: 1e-158; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 11 - 321
Target Start/End: Complemental strand, 5478897 - 5478588
Alignment:
| Q |
11 |
atattacaaggacgcagaaactaaaatgtttcatttaaggtttcattttcttagagatcaagtgaacaaggatagtcagaacatgaaaattgcaagtatg |
110 |
Q |
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| T |
5478897 |
atattacaaggacgcggaaactaaaatgtttcatttaaggtttcattttcttagagatcaagtgaacaaggatggtcagaacatgaaaattgtaagtatg |
5478798 |
T |
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| Q |
111 |
agttgctattagaatactatttcccaatgagcgtcaactaaacgatggcgtctccagaaaatctacctttgtatcatatgttctatctttctcagaggag |
210 |
Q |
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| T |
5478797 |
agttgc-attagaatactatttcccaatgagcgtcaactatacgatggcgtctccagaaaatctacctttgtatcatatgatctatctttctcagaggag |
5478699 |
T |
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| Q |
211 |
gtttaccgtggaatgataattcaactgctgaagttttctgattcatttgcaaataaagcacttcagcatggtgtatgttcaaaatcctcaacttgttcga |
310 |
Q |
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| T |
5478698 |
gtttaccgtggaatgataattcaactgctgaagttttctgattcatttgcaaataaagcacttcagcatggtgtatgttcaaaatcctcaacttgttcga |
5478599 |
T |
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| Q |
311 |
gacactgtgat |
321 |
Q |
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| T |
5478598 |
gacactgtgat |
5478588 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 52; Significance: 9e-21; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 225 - 319
Target Start/End: Original strand, 31402413 - 31402508
Alignment:
| Q |
225 |
gataattcaactgctgaagttttctgattcatttgcaaata-aagcacttcagcatggtgtatgttcaaaatcctcaacttgttcgagacactgtg |
319 |
Q |
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| T |
31402413 |
gataattcaacttctgaattttgctgattcgtttgcaaatcgaagcccttcaccatggcgtatgtttaaaatcctcaacttgttcgagacactgtg |
31402508 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 226 - 319
Target Start/End: Original strand, 8040051 - 8040145
Alignment:
| Q |
226 |
ataattcaactgctgaagttttctgattcatttgcaaata-aagcacttcagcatggtgtatgttcaaaatcctcaacttgttcgagacactgtg |
319 |
Q |
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| T |
8040051 |
ataattcaactgctgatttttgctgattcgtttgcaaattgaagccattcagcctggtatatgtttaaaatccttaacttgttcgagacactgtg |
8040145 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 225 - 314
Target Start/End: Original strand, 9137081 - 9137171
Alignment:
| Q |
225 |
gataattcaactgctgaagttttctgattcatttgcaaat-aaagcacttcagcatggtgtatgttcaaaatcctcaacttgttcgagaca |
314 |
Q |
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| T |
9137081 |
gataattcaactgctgaatttttctgatttatttgcaaatcgaaacccttcagcctggcatatgtttaaaatccttgacttgttcgcgaca |
9137171 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 283 - 319
Target Start/End: Complemental strand, 8406138 - 8406102
Alignment:
| Q |
283 |
gtatgttcaaaatcctcaacttgttcgagacactgtg |
319 |
Q |
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| T |
8406138 |
gtatgttcaaaattctcaacttgttcgagacactgtg |
8406102 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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