View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18772_high_17 (Length: 241)
Name: NF18772_high_17
Description: NF18772
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18772_high_17 |
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Alignment Details
Target: chr3 (Bit Score: 144; Significance: 8e-76; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 144; E-Value: 8e-76
Query Start/End: Original strand, 57 - 225
Target Start/End: Complemental strand, 30352110 - 30351946
Alignment:
| Q |
57 |
aactttttgtcctctttctgaacaaattaatttctatatataccccctcagaaggatacatctacattcattattcacaaataaattaattgaagccttt |
156 |
Q |
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| T |
30352110 |
aactttttgtcctctttctgaacaaattaatttctatatataccccctc----ggatacatctatattcattattcacaaataaattaattgaagtcttt |
30352015 |
T |
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| Q |
157 |
acgtggctgccaattaaccaaatgtaacagcaaaataaggaaatttcacaaattgagcatctggtacct |
225 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30352014 |
acgtggctgccaattaaccaaatgtaacagcaaaataaggaaatttcacaaattgagcatctggtacct |
30351946 |
T |
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