View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18772_high_5 (Length: 393)

Name: NF18772_high_5
Description: NF18772
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18772_high_5
NF18772_high_5
[»] chr4 (5 HSPs)
chr4 (1-378)||(4115292-4115670)
chr4 (26-150)||(15131508-15131634)
chr4 (27-158)||(53999981-54000114)
chr4 (25-80)||(25234299-25234354)
chr4 (21-70)||(22050950-22050999)
[»] chr3 (5 HSPs)
chr3 (7-150)||(39341215-39341360)
chr3 (6-105)||(54028612-54028711)
chr3 (13-69)||(54437905-54437961)
chr3 (24-115)||(7938118-7938211)
chr3 (6-54)||(46258510-46258558)
[»] chr6 (4 HSPs)
chr6 (24-150)||(32047190-32047318)
chr6 (98-150)||(23577167-23577219)
chr6 (97-152)||(32342614-32342669)
chr6 (33-81)||(26236596-26236644)
[»] chr5 (7 HSPs)
chr5 (7-152)||(7113528-7113675)
chr5 (46-148)||(39730261-39730363)
chr5 (9-150)||(40483698-40483840)
chr5 (97-155)||(2243322-2243380)
chr5 (97-152)||(14138559-14138614)
chr5 (19-72)||(5205286-5205339)
chr5 (20-81)||(7215224-7215285)
[»] chr2 (4 HSPs)
chr2 (12-152)||(16576262-16576403)
chr2 (51-144)||(2909844-2909939)
chr2 (97-150)||(38576943-38576996)
chr2 (6-65)||(13712671-13712730)
[»] chr7 (7 HSPs)
chr7 (7-158)||(34891541-34891694)
chr7 (7-147)||(23944095-23944236)
chr7 (97-152)||(32138892-32138947)
chr7 (40-80)||(27651288-27651328)
chr7 (1-134)||(42012833-42012967)
chr7 (98-152)||(31152738-31152792)
chr7 (6-58)||(31152615-31152667)
[»] chr1 (5 HSPs)
chr1 (98-152)||(10775177-10775231)
chr1 (97-152)||(46080985-46081040)
chr1 (99-152)||(52432675-52432728)
chr1 (97-145)||(3231979-3232027)
chr1 (7-71)||(46081052-46081116)
[»] chr8 (5 HSPs)
chr8 (97-155)||(35574646-35574704)
chr8 (97-158)||(32166641-32166702)
chr8 (99-152)||(6630547-6630600)
chr8 (5-74)||(32166548-32166616)
chr8 (27-80)||(35574743-35574796)


Alignment Details
Target: chr4 (Bit Score: 283; Significance: 1e-158; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 1 - 378
Target Start/End: Original strand, 4115292 - 4115670
Alignment:
Q  1 atttttggtgaggcctatgttaccccttgatgaattaaggg-taatttacccctaatgataaataagattcaattttggaataaggtaaacggagatcat 99  Q
    ||||||| |||| ||||| |||||||||||||||||| ||| | |  |||||||||||||||||||||||||||||||||| ||| ||||||||||||||    
T  4115292 atttttgttgagacctatattaccccttgatgaattagggggtgaactacccctaatgataaataagattcaattttggaacaagataaacggagatcat 4115391  T
Q  100 gttgaatgaatgagatggagaagtttcatgttcttaagatgaaaatggtaattaatagtnnnnnnnnnnnnccatatcggtgagctagatttttctatga 199  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||            |||||||||||||||||||||||||||||    
T  4115392 gttgaatgaatgagatggagaagtttcatgttcttaagataaaaatggtaattaatagtaaaaagaaaaaaccatatcggtgagctagatttttctatga 4115491  T
Q  200 atgtgatatattgtcatatcacaagaacatgatatattgttgcctgagttcaagtctacagtttctcacttctcagcacttagttataatgatatccaca 299  Q
    |||||||||||||||||||||||||||||||||||||||||||| || ||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  4115492 atgtgatatattgtcatatcacaagaacatgatatattgttgcccgaattcaaatctacagtttctcacttctcagcacttagttataatgatatccaca 4115591  T
Q  300 caaagagacgacggcaccttgtcaattggtgtgttgggtttatctttattgtcaatgtgttagtattttcactttagtc 378  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4115592 caaagagacgacggcaccttgtcaattggtgtgttgggtttatctttattgtcaatgtgttagtattttcactttagtc 4115670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 26 - 150
Target Start/End: Original strand, 15131508 - 15131634
Alignment:
Q  26 cttgatgaattaagggtaatttacccctaatgataaataagattcaattttggaataaggtaaacggagat--catgttgaatgaatgagatggagaagt 123  Q
    ||||||||||||||||| |||||| |||||| | |||||||||| ||||||  ||  | |||||  |||||  |||| |||||||| |||||| |||| |    
T  15131508 cttgatgaattaagggtgatttactcctaataagaaataagatttaatttttaaacgaagtaaatagagatcacatgctgaatgaaggagatgaagaaat 15131607  T
Q  124 ttcatgttcttaagatgaaaatggtaa 150  Q
    || |||||||| |||| ||||||||||    
T  15131608 ttgatgttcttgagataaaaatggtaa 15131634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 27 - 158
Target Start/End: Original strand, 53999981 - 54000114
Alignment:
Q  27 ttgatgaattaagggtaatttacccctaatgataaataagattcaattttggaataaggtaaacggagat--catgttgaatgaatgagatggagaagtt 124  Q
    |||||||||||  ||||||||| |||||| ||||||||||||| ||||||  ||  | ||||| ||||||  |||||||||| |||| |||| |    ||    
T  53999981 ttgatgaattagaggtaatttagccctaaagataaataagatttaattttaaaacgaagtaaatggagatcacatgttgaataaatgtgatgaatttttt 54000080  T
Q  125 tcatgttcttaagatgaaaatggtaattaatagt 158  Q
    | |||||||| ||||||||||||||||| |||||    
T  54000081 tgatgttcttgagatgaaaatggtaattgatagt 54000114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 25 - 80
Target Start/End: Original strand, 25234299 - 25234354
Alignment:
Q  25 ccttgatgaattaagggtaatttacccctaatgataaataagattcaattttggaa 80  Q
    ||||||||||||| |||||||||||| || |||| ||||| ||||| |||||||||    
T  25234299 ccttgatgaattacgggtaatttaccgctcatgacaaatacgattcgattttggaa 25234354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 21 - 70
Target Start/End: Complemental strand, 22050999 - 22050950
Alignment:
Q  21 taccccttgatgaattaagggtaatttacccctaatgataaataagattc 70  Q
    |||||||| |||||||  ||||||||||||| |||||||||||| |||||    
T  22050999 tacccctttatgaattgggggtaatttacccttaatgataaatatgattc 22050950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 79; Significance: 8e-37; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 7 - 150
Target Start/End: Complemental strand, 39341360 - 39341215
Alignment:
Q  7 ggtgaggcctatgttaccccttgatgaattaagggtaatttacccctaatgataaataagattcaattttggaataaggtaaacggaga--tcatgttga 104  Q
    ||||||| ||||||||||| ||||||||||| |||||||||||| ||||||||||||||||||||||||| |||  | ||||| |||||  |||||||||    
T  39341360 ggtgaggtctatgttaccctttgatgaattaggggtaatttacctctaatgataaataagattcaattttagaacgaagtaaatggagatctcatgttga 39341261  T
Q  105 atgaatgagatggagaagtttcatgttcttaagatgaaaatggtaa 150  Q
    ||||| |||||| | |||||| || |||||||||||||||||||||    
T  39341260 atgaaggagatgaaaaagtttgatattcttaagatgaaaatggtaa 39341215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 6 - 105
Target Start/End: Complemental strand, 54028711 - 54028612
Alignment:
Q  6 tggtgaggcctatgttaccccttgatgaattaagggtaatttacccctaatgataaataagattcaattttggaataaggtaaacggagatcatgttgaa 105  Q
    ||||||||||||| |||||  || ||||||| ||||||||||| ||||||||||||||| ||||||||| || ||| | | | | |||||||||||||||    
T  54028711 tggtgaggcctatattaccatttcatgaattgagggtaatttatccctaatgataaatatgattcaattatgaaatgaaggagatggagatcatgttgaa 54028612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 13 - 69
Target Start/End: Complemental strand, 54437961 - 54437905
Alignment:
Q  13 gcctatgttaccccttgatgaattaagggtaatttacccctaatgataaataagatt 69  Q
    ||||| ||||||||||| ||||||| |||||||||||| ||||||||||||| ||||    
T  54437961 gcctacgttaccccttgttgaattaggggtaatttacctctaatgataaatatgatt 54437905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 24 - 115
Target Start/End: Complemental strand, 7938211 - 7938118
Alignment:
Q  24 cccttgatgaattaagggtaatttacccctaatgataaataagattcaattttggaataaggtaaacggagat--catgttgaatgaatgagat 115  Q
    |||||||||||||  | ||||||||||| |||||||||||||||||| ||| | ||  || | ||||||||||  ||||||||||||| |||||    
T  7938211 cccttgatgaattgcgtgtaatttacccttaatgataaataagattcgattctagagcaaagaaaacggagatcgcatgttgaatgaaggagat 7938118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 6 - 54
Target Start/End: Original strand, 46258510 - 46258558
Alignment:
Q  6 tggtgaggcctatgttaccccttgatgaattaagggtaatttaccccta 54  Q
    ||||||| ||||  |||||||||||||||||  ||||||||||||||||    
T  46258510 tggtgagacctacattaccccttgatgaattgggggtaatttaccccta 46258558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 58; Significance: 3e-24; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 24 - 150
Target Start/End: Complemental strand, 32047318 - 32047190
Alignment:
Q  24 cccttgatgaattaagggtaatttacccctaatgataaataagattcaattttggaataaggtaaacggagatc--atgttgaatgaatgagatggagaa 121  Q
    ||||||||||||| ||| ||||||||| |||||||||| || ||||||||| |||||| | | | ||| | |||  ||||||||||||||||||| ||||    
T  32047318 cccttgatgaattgaggataatttacctctaatgataagtaggattcaattatggaatgaagaagacgaatatcatatgttgaatgaatgagatgaagaa 32047219  T
Q  122 gtttcatgttcttaagatgaaaatggtaa 150  Q
    |||| |||||||| |||||||||||||||    
T  32047218 gtttgatgttcttgagatgaaaatggtaa 32047190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 98 - 150
Target Start/End: Complemental strand, 23577219 - 23577167
Alignment:
Q  98 atgttgaatgaatgagatggagaagtttcatgttcttaagatgaaaatggtaa 150  Q
    |||||||||||| ||||||||||||| | ||||| || |||||||||||||||    
T  23577219 atgttgaatgaaggagatggagaagtatgatgtttttgagatgaaaatggtaa 23577167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 97 - 152
Target Start/End: Complemental strand, 32342669 - 32342614
Alignment:
Q  97 catgttgaatgaatgagatggagaagtttcatgttcttaagatgaaaatggtaatt 152  Q
    |||||||||||||||||||| | |||||| ||||| || ||||||||||| |||||    
T  32342669 catgttgaatgaatgagatgaaaaagtttgatgtttttgagatgaaaatgataatt 32342614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 33 - 81
Target Start/End: Original strand, 26236596 - 26236644
Alignment:
Q  33 aattaagggtaatttacccctaatgataaataagattcaattttggaat 81  Q
    ||||| |||||||||| | ||||||||||||| ||||||||||| ||||    
T  26236596 aattacgggtaatttatctctaatgataaatatgattcaattttagaat 26236644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 57; Significance: 1e-23; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 7 - 152
Target Start/End: Original strand, 7113528 - 7113675
Alignment:
Q  7 ggtgaggcctatgttaccccttgatgaattaagggtaatttacccctaatgataaataagattcaattttggaataaggtaaacggagat--catgttga 104  Q
    |||||| | ||||||||| |||| ||||||| | ||||||||| ||||||||||||||||||| ||||||||||  | ||||| | | ||  || |||||    
T  7113528 ggtgagacatatgttacctcttgttgaattaggtgtaatttactcctaatgataaataagatttaattttggaacgatgtaaatgaaaatcacacgttga 7113627  T
Q  105 atgaatgagatggagaagtttcatgttcttaagatgaaaatggtaatt 152  Q
    |||||||||||| |||||||| || ||||| ||||||||||| |||||    
T  7113628 atgaatgagatgaagaagtttaatattcttgagatgaaaatgataatt 7113675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 46 - 148
Target Start/End: Original strand, 39730261 - 39730363
Alignment:
Q  46 ttacccctaatgataaataagattcaattttggaataaggtaaacggagatcatgttgaatgaatgagatggagaagtttcatgttcttaagatgaaaat 145  Q
    ||||||||||| ||||||||||||||||||| ||| || ||||| | |||||||||| |||||| |||||| | |||||| |||||||| ||||||||||    
T  39730261 ttacccctaatcataaataagattcaattttagaacaaagtaaatgaagatcatgttaaatgaaagagatgaaaaagtttgatgttcttgagatgaaaat 39730360  T
Q  146 ggt 148  Q
    |||    
T  39730361 ggt 39730363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 9 - 150
Target Start/End: Complemental strand, 40483840 - 40483698
Alignment:
Q  9 tgaggcctatgttaccccttgatgaattaagggtaatttacccctaatgataaataagattcaattttggaataaggtaaacggagat--catgttgaat 106  Q
    |||||||||||||| | ||||||||||| ||||||| ||||||| |||||||| || ||||| |||||||||  |   | | | ||||  ||||||||||    
T  40483840 tgaggcctatgttatctcttgatgaattgagggtaaattacccccaatgataagtatgattcgattttggaacgaatgagatgaagatcacatgttgaat 40483741  T
Q  107 gaatgagatggagaagtttcatgttcttaagatgaaaatggtaa 150  Q
    || ||||||| |||||||| ||||| || |||||||||| ||||    
T  40483740 gagtgagatgaagaagtttgatgtt-tttagatgaaaatagtaa 40483698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 97 - 155
Target Start/End: Original strand, 2243322 - 2243380
Alignment:
Q  97 catgttgaatgaatgagatggagaagtttcatgttcttaagatgaaaatggtaattaat 155  Q
    ||||||||||||| || ||| |||||||| |||||||| ||||||||||||||| ||||    
T  2243322 catgttgaatgaaggatatgaagaagtttgatgttcttgagatgaaaatggtaactaat 2243380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 97 - 152
Target Start/End: Complemental strand, 14138614 - 14138559
Alignment:
Q  97 catgttgaatgaatgagatggagaagtttcatgttcttaagatgaaaatggtaatt 152  Q
    ||||||||||||| ||||||   |||||| || |||||||||||||||||||||||    
T  14138614 catgttgaatgaaagagatgagaaagtttgatattcttaagatgaaaatggtaatt 14138559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 72
Target Start/End: Original strand, 5205286 - 5205339
Alignment:
Q  19 gttaccccttgatgaattaagggtaatttacccctaatgataaataagattcaa 72  Q
    |||||||||||||||||| | | ||||||| || ||||||||| ||||||||||    
T  5205286 gttaccccttgatgaattgatgataatttatccataatgataagtaagattcaa 5205339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 20 - 81
Target Start/End: Original strand, 7215224 - 7215285
Alignment:
Q  20 ttaccccttgatgaattaagggtaatttacccctaatgataaataagattcaattttggaat 81  Q
    ||||| |||| ||||||  ||||||||||||  |||||||||||| ||||||||||| ||||    
T  7215224 ttacctcttgttgaattcggggtaatttaccgttaatgataaatatgattcaattttagaat 7215285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 48; Significance: 2e-18; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 12 - 152
Target Start/End: Complemental strand, 16576403 - 16576262
Alignment:
Q  12 ggcctatgttaccccttgatgaattaagggtaatttacccctaatgataaataagattcaattttggaataaggtaaacggagatca--tgttgaatgaa 109  Q
    |||||| ||||||||||||||||||  || |||||||||||||||||||| || ||||| ||| |||||  |   | | ||||||||  |||||||||||    
T  16576403 ggcctacgttaccccttgatgaattg-ggttaatttacccctaatgataagtatgattcgattctggaacgaatgagaaggagatcacatgttgaatgaa 16576305  T
Q  110 tgagatggagaagtttcatgttcttaagatgaaaatggtaatt 152  Q
     |||||| |||||||| |||||||| ||| |||||||||||||    
T  16576304 ggagatgaagaagtttgatgttcttgagaggaaaatggtaatt 16576262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 51 - 144
Target Start/End: Complemental strand, 2909939 - 2909844
Alignment:
Q  51 cctaatgataaataagattcaattttggaataaggtaaacggagat--catgttgaatgaatgagatggagaagtttcatgttcttaagatgaaaa 144  Q
    |||||||||||||||||||||||||| |||| | ||||| | ||||  ||||||||||||| |||||| |||||||| ||||| |||| |||||||    
T  2909939 cctaatgataaataagattcaattttagaatgaagtaaatgtagattacatgttgaatgaaggagatgaagaagtttgatgtttttaaaatgaaaa 2909844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 97 - 150
Target Start/End: Original strand, 38576943 - 38576996
Alignment:
Q  97 catgttgaatgaatgagatggagaagtttcatgttcttaagatgaaaatggtaa 150  Q
    ||||||||||||| |||||| |||| ||| |||||||| |||||||||||||||    
T  38576943 catgttgaatgaaagagatgaagaactttaatgttctttagatgaaaatggtaa 38576996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 6 - 65
Target Start/End: Original strand, 13712671 - 13712730
Alignment:
Q  6 tggtgaggcctatgttaccccttgatgaattaaggg-taatttacccctaatgataaataa 65  Q
    |||||||||||||||||||  ||||| ||| ||||| |||||||| |||||||||||||||    
T  13712671 tggtgaggcctatgttacct-ttgataaataaaggggtaatttacacctaatgataaataa 13712730  T

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Target: chr7 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 7 - 158
Target Start/End: Complemental strand, 34891694 - 34891541
Alignment:
Q  7 ggtgaggcctatgttaccccttgatgaattaagggtaatttacccctaatgataaataagattcaattttggaataaggtaaacggagat--catgttga 104  Q
    ||||||| ||||||||||| || |||||||| |||||||||||    ||| | |||||||||||||||||  ||  | | ||| ||||||  ||||||||    
T  34891694 ggtgaggtctatgttaccctttaatgaattaggggtaatttactatcaataacaaataagattcaattttataacgaagcaaatggagatcacatgttga 34891595  T
Q  105 atgaatgagatggagaagtttcatgttcttaagatgaaaatggtaattaatagt 158  Q
    ||||| |||||| |||| ||| |||||||| |||| |||||| ||| |||||||    
T  34891594 atgaaggagatgaagaaatttgatgttcttgagatcaaaatgataactaatagt 34891541  T

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Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 7 - 147
Target Start/End: Complemental strand, 23944236 - 23944095
Alignment:
Q  7 ggtgaggcctatgttaccccttgatgaattaagggtaatttacccctaatgataaataagattcaattttggaataaggtaaacggagat--catgttga 104  Q
    |||||||||||  ||| |||||||||||||  || | | |||||||| ||||||| || ||||| ||| |||||||| | | | ||| ||  ||||||||    
T  23944236 ggtgaggcctacattatcccttgatgaatttgggatga-ttacccctgatgataagtatgattcgattctggaataaaggagatggaaatcacatgttga 23944138  T
Q  105 atgaatgagatggagaagtttcatgttcttaagatgaaaatgg 147  Q
    ||||| |||| | |||||||| |||||||||||||||||||||    
T  23944137 atgaaagagaagaagaagtttgatgttcttaagatgaaaatgg 23944095  T

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Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 97 - 152
Target Start/End: Original strand, 32138892 - 32138947
Alignment:
Q  97 catgttgaatgaatgagatggagaagtttcatgttcttaagatgaaaatggtaatt 152  Q
    ||||||||| ||| |||||| |||| ||| ||||||||||||||||||||||||||    
T  32138892 catgttgaacgaaggagatgaagaattttgatgttcttaagatgaaaatggtaatt 32138947  T

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Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 40 - 80
Target Start/End: Original strand, 27651288 - 27651328
Alignment:
Q  40 ggtaatttacccctaatgataaataagattcaattttggaa 80  Q
    ||||||||| ||||||||| |||||||||||||||||||||    
T  27651288 ggtaatttatccctaatgaaaaataagattcaattttggaa 27651328  T

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Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 134
Target Start/End: Complemental strand, 42012967 - 42012833
Alignment:
Q  1 atttttggtgaggcctatgttaccccttgatgaattaagggtaatttacccctaatgataaataagattcaattttggaataaggtaaacggagat--ca 98  Q
    ||||| ||||||||||| ||||||| || |||||| |  | ||||||||  |||||||||||||||||| |||| | |||  | ||||| ||||||  ||    
T  42012967 attttgggtgaggcctacgttaccctttaatgaataagagataatttacttctaatgataaataagatttaattcttgaacgaagtaaatggagatcaca 42012868  T
Q  99 tgttgaatgaatgagatggagaagtttcatgttctt 134  Q
    |||||||| ||| ||||| | |||||| ||||||||    
T  42012867 tgttgaataaat-agatgaaaaagtttgatgttctt 42012833  T

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Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 98 - 152
Target Start/End: Original strand, 31152738 - 31152792
Alignment:
Q  98 atgttgaatgaatgagatggagaagtttcatgttcttaagatgaaaatggtaatt 152  Q
    |||||||||||| || ||| ||||| || ||||| ||||||||||||||||||||    
T  31152738 atgttgaatgaaagaaatgaagaagattgatgtttttaagatgaaaatggtaatt 31152792  T

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Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 6 - 58
Target Start/End: Original strand, 31152615 - 31152667
Alignment:
Q  6 tggtgaggcctatgttaccccttgatgaattaagggtaatttacccctaatga 58  Q
    |||||||||||| |||||||||| |||||||  |||||||| | |||||||||    
T  31152615 tggtgaggcctacgttaccccttcatgaattgggggtaattgatccctaatga 31152667  T

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Target: chr1 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 98 - 152
Target Start/End: Complemental strand, 10775231 - 10775177
Alignment:
Q  98 atgttgaatgaatgagatggagaagtttcatgttcttaagatgaaaatggtaatt 152  Q
    |||||||| ||| |||||| |||||||| ||||||||||||||||||||||||||    
T  10775231 atgttgaacgaaagagatgaagaagtttgatgttcttaagatgaaaatggtaatt 10775177  T

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Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 97 - 152
Target Start/End: Complemental strand, 46081040 - 46080985
Alignment:
Q  97 catgttgaatgaatgagatggagaagtttcatgttcttaagatgaaaatggtaatt 152  Q
    |||||||| |||| |||||| |||||||| |||||||| |||||||||||||||||    
T  46081040 catgttgagtgaaggagatgaagaagtttaatgttcttgagatgaaaatggtaatt 46080985  T

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Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 99 - 152
Target Start/End: Complemental strand, 52432728 - 52432675
Alignment:
Q  99 tgttgaatgaatgagatggagaagtttcatgttcttaagatgaaaatggtaatt 152  Q
    |||| |||||| |||||| |||||||| |||||||| |||||||||||||||||    
T  52432728 tgttaaatgaaggagatgaagaagtttaatgttcttgagatgaaaatggtaatt 52432675  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 97 - 145
Target Start/End: Complemental strand, 3232027 - 3231979
Alignment:
Q  97 catgttgaatgaatgagatggagaagtttcatgttcttaagatgaaaat 145  Q
    |||||||||||||||| ||| ||||||||  ||||||| ||||||||||    
T  3232027 catgttgaatgaatgacatgaagaagtttgttgttcttgagatgaaaat 3231979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 7 - 71
Target Start/End: Complemental strand, 46081116 - 46081052
Alignment:
Q  7 ggtgaggcctatgttaccccttgatgaattaagggtaatttacccctaatgataaataagattca 71  Q
    ||||||| ||| ||||||| ||||||||||  ||||||||||| | ||||||||| || ||||||    
T  46081116 ggtgaggtctacgttaccctttgatgaattgggggtaatttactcttaatgataagtacgattca 46081052  T

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Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 97 - 155
Target Start/End: Original strand, 35574646 - 35574704
Alignment:
Q  97 catgttgaatgaatgagatggagaagtttcatgttcttaagatgaaaatggtaattaat 155  Q
    |||||||||||||||||||| | || ||| ||||||||||||||||||| |||| ||||    
T  35574646 catgttgaatgaatgagatgaaaaaatttgatgttcttaagatgaaaatcgtaactaat 35574704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 97 - 158
Target Start/End: Original strand, 32166641 - 32166702
Alignment:
Q  97 catgttgaatgaatgagatggagaagtttcatgttcttaagatgaaaatggtaattaatagt 158  Q
    |||||||||| || |||||| |||||||| |||||||| ||||||||||| ||||| |||||    
T  32166641 catgttgaataaaggagatgaagaagtttgatgttcttgagatgaaaatgataattgatagt 32166702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 99 - 152
Target Start/End: Original strand, 6630547 - 6630600
Alignment:
Q  99 tgttgaatgaatgagatggagaagtttcatgttcttaagatgaaaatggtaatt 152  Q
    |||| |||||| |||||| |||| ||| ||| ||||||||||||||||||||||    
T  6630547 tgttaaatgaaggagatgaagaaatttaatgatcttaagatgaaaatggtaatt 6630600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 5 - 74
Target Start/End: Original strand, 32166548 - 32166616
Alignment:
Q  5 ttggtgaggcctatgttaccccttgatgaattaagggtaatttacccctaatgataaataagattcaatt 74  Q
    ||||| |||||||||||| || ||||||||||| |||||||||    ||||||||||| |||||||||||    
T  32166548 ttggtaaggcctatgttatcctttgatgaattaggggtaattt-gttctaatgataaaaaagattcaatt 32166616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 27 - 80
Target Start/End: Original strand, 35574743 - 35574796
Alignment:
Q  27 ttgatgaattaagggtaatttacccctaatgataaataagattcaattttggaa 80  Q
    |||||||||| ||||||||||||| ||||||| || || ||||| |||||||||    
T  35574743 ttgatgaattgagggtaatttaccgctaatgacaactatgattcgattttggaa 35574796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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