View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18772_high_6 (Length: 391)
Name: NF18772_high_6
Description: NF18772
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18772_high_6 |
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Alignment Details
Target: chr2 (Bit Score: 336; Significance: 0; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 10 - 374
Target Start/End: Complemental strand, 5440995 - 5440627
Alignment:
| Q |
10 |
aagaatatgtagagagaaggtgagaaaaatgcacccgtgttcgaccttggtggtggaacttttgatgtttccttagtctatcattgacgaaggaatattc |
109 |
Q |
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| T |
5440995 |
aagaaaatgtagagagaaggtgagaaaaatgcacccgtgttcgaccttggtggtggaacttttgatgtttccttagtccatcattgacgaaggaatattc |
5440896 |
T |
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| Q |
110 |
aaagttaaagcaacattgagacatacgttaacgtttgggtgatgttgagtttgataacaatttggtgaaccttcttgttgaattattttatagaaagtac |
209 |
Q |
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| T |
5440895 |
aaagttaaagcaacattgagacatacgttaatgtttgggtgatgttgagtttgataacaatttggtgaaccttcttgttgaattattttatagaaagtac |
5440796 |
T |
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| Q |
210 |
aagaaggatttgaagatcagtgagaattccaaagctttggggag----gttaaggtcagcatgtgagaaagcaaagaggttactttcttcaacttaaaca |
305 |
Q |
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| T |
5440795 |
aagaaggatttgaagatcagtgagaattccaaagctttggggaggttagttaaggtcagcatgtgagaaagcaaagaggttaccttcttcaacttaaaca |
5440696 |
T |
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| Q |
306 |
attattcagtaacattgtactactaattgataaagttcttactttgtattgttttcttctgatcaaagt |
374 |
Q |
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| T |
5440695 |
attattcagtaacattgtactactaattgataaagttcttactttgtattgttttcttctgatcaaagt |
5440627 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 138; E-Value: 5e-72
Query Start/End: Original strand, 10 - 296
Target Start/End: Original strand, 5445684 - 5445965
Alignment:
| Q |
10 |
aagaatatgtagagagaaggtgagaaaaatgcacccgtgttcgaccttggtggtggaacttttgatgtttccttagtctatcattgacgaaggaatattc |
109 |
Q |
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| T |
5445684 |
aagaaaatgtggagagaaggtgagaagaatgtgcttgtgtttgatcttggtggtggaacattcgatgtttccttagtg-accattgatgaaggaatgttc |
5445782 |
T |
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| Q |
110 |
aaagttaaagcaacattgagacatacgttaacgtttgggtgatgttgagtttgataacaatttggtgaaccttcttgttgaattattttatagaaagtac |
209 |
Q |
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| T |
5445783 |
caggttaaggccacattgggagatact----catttgggtggtattgatttcgataacaatttggtgaaccgtcttgttgaattatttcatagaaagtac |
5445878 |
T |
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| Q |
210 |
aagaaggatttgaagatcagtgagaattccaaagctttggggaggttaaggtcagcatgtgagaaagcaaagaggttactttcttca |
296 |
Q |
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| T |
5445879 |
aagaaggatttgaagatcagtgagaatttcaaagctttggggaggttaagatcagcatgtgagaaagcaaagaggttactttcttca |
5445965 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 152 - 283
Target Start/End: Complemental strand, 5433461 - 5433330
Alignment:
| Q |
152 |
tgttgagtttgataacaatttggtgaaccttcttgttgaattattttatagaaagtacaagaaggatttgaagatcagtgagaattccaaagctttgggg |
251 |
Q |
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| T |
5433461 |
tgttgactttgataacaatttggtgaaccgtcttgttgaattgtttcatagaaagtacaagaaagatttgaacatcagtgagaattccaaagctttgtgg |
5433362 |
T |
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| Q |
252 |
aggttaaggtcagcatgtgagaaagcaaagag |
283 |
Q |
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| T |
5433361 |
agattaaggtcagcatgtgataaagtaaagag |
5433330 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 159 - 261
Target Start/End: Complemental strand, 5432541 - 5432439
Alignment:
| Q |
159 |
tttgataacaatttggtgaaccttcttgttgaattattttatagaaagtacaagaaggatttgaagatcagtgagaattccaaagctttggggaggttaa |
258 |
Q |
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||||||||||||||||||||| |||||||||||| || | |||| ||||||||| || ||||| || ||||||||| |||||||| || |||||| |
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| T |
5432541 |
tttgataacaatttggtgaactgtcttgttgaattgttaaagagaatgtacaagaaagacttgaacattggtgagaattataaagctttaggagggttaa |
5432442 |
T |
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| Q |
259 |
ggt |
261 |
Q |
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||| |
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| T |
5432441 |
ggt |
5432439 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 49 - 77
Target Start/End: Complemental strand, 8647073 - 8647045
Alignment:
| Q |
49 |
ttcgaccttggtggtggaacttttgatgt |
77 |
Q |
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| T |
8647073 |
ttcgaccttggtggtggaacttttgatgt |
8647045 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 49 - 81
Target Start/End: Original strand, 23587705 - 23587737
Alignment:
| Q |
49 |
ttcgaccttggtggtggaacttttgatgtttcc |
81 |
Q |
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| T |
23587705 |
ttcgatcttggtggtggaacttttgatgtttcc |
23587737 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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