View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18772_high_9 (Length: 384)
Name: NF18772_high_9
Description: NF18772
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18772_high_9 |
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Alignment Details
Target: chr3 (Bit Score: 350; Significance: 0; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 350; E-Value: 0
Query Start/End: Original strand, 1 - 362
Target Start/End: Original strand, 7989148 - 7989509
Alignment:
| Q |
1 |
acaaagatcccacctttatgaagaagctctcctcccacacatgaagaggaattcccactagtgcaaatcagggggtacaagacatgatttttaaagtttt |
100 |
Q |
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| T |
7989148 |
acaaagatcccacctttatgaagaagctttcctcccacacatgaagaggaattcccactactgcaaatcagggggtacaagacatgatttttaaagtttt |
7989247 |
T |
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| Q |
101 |
aagacctgttttcaaccggggttatatcagcaagtgttgtaagtttgacatatgatgcctgtttttcatctggtataaaaataacttattgtatctgttt |
200 |
Q |
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| T |
7989248 |
aagacctgttttcaaccggggttatatcagcaagtgttgtaagtttgacatatgatgcctgtttttcatctggtataaaaataacttattgtatctgttt |
7989347 |
T |
|
| Q |
201 |
tgtaagtgtaatatttgtatttatcacacttgttttgcacaaaaatatgtgtaaaaatgaacaaattcaacatctatattagtattaaagcggtgtgaaa |
300 |
Q |
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| T |
7989348 |
tgtaagtgtaatatttgtatttatcacacttgttttgcacaaaaatatgtgtaaaaatgaacaaattcaatatctatattagtattaaagcggtgtgaaa |
7989447 |
T |
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| Q |
301 |
tgtgactttttatttaaaaaaggagaaaacttaggtaaagtaccatatgtgctggtggtcct |
362 |
Q |
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| T |
7989448 |
tgtgactttttatttaaaaaaggagaaaacttaggtaaagtaccatatgtgctggtggtcct |
7989509 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 319 - 365
Target Start/End: Complemental strand, 30518185 - 30518139
Alignment:
| Q |
319 |
aaaggagaaaacttaggtaaagtaccatatgtgctggtggtcctgtt |
365 |
Q |
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| T |
30518185 |
aaaggagaaaacttaggtaaattaccttatgtgctggtggtactgtt |
30518139 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 323 - 359
Target Start/End: Complemental strand, 8003639 - 8003603
Alignment:
| Q |
323 |
gagaaaacttaggtaaagtaccatatgtgctggtggt |
359 |
Q |
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| T |
8003639 |
gagaaaacttaggtacagtaccttatgtgctggtggt |
8003603 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 321 - 365
Target Start/End: Original strand, 30517608 - 30517652
Alignment:
| Q |
321 |
aggagaaaacttaggtaaagtaccatatgtgctggtggtcctgtt |
365 |
Q |
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| T |
30517608 |
aggagaaaacttaggtacagtaccttgtgtgctggtggtactgtt |
30517652 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 316 - 353
Target Start/End: Complemental strand, 56236326 - 56236289
Alignment:
| Q |
316 |
aaaaaaggagaaaacttaggtaaagtaccatatgtgct |
353 |
Q |
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|||| |||||||||||||||||||||||| |||||||| |
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| T |
56236326 |
aaaataggagaaaacttaggtaaagtaccttatgtgct |
56236289 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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