View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18772_low_11 (Length: 365)
Name: NF18772_low_11
Description: NF18772
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18772_low_11 |
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Alignment Details
Target: chr5 (Bit Score: 320; Significance: 1e-180; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 18 - 353
Target Start/End: Original strand, 6731928 - 6732263
Alignment:
| Q |
18 |
aaaagaaacacagaaacaccatacttgagcaactcaatcttcaactcagtgaaaaggtcaagccttccggtaaattcaggaacttgaggagcaccacacc |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
6731928 |
aaaagaaacacagaaacaccatacttgagcaactcaatcttcaactcagtgaaaaggtcaagccttccagtaaattcaggaacttgaggagcaccacacc |
6732027 |
T |
|
| Q |
118 |
aaaaccttatttgattcccatgaatcttttccgcaagaaccaacagcttcatcaaatcccttttattctcaaatggaacaacaacagacgaatgccagtg |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6732028 |
aaaaccttatttgattcccatgaatcttttccgcaagaaccaacagcttcatcaaatcccttttattctcaaatggaacaacaacagacgaatgccagtc |
6732127 |
T |
|
| Q |
218 |
aagagcatcaagtttcttctgaagcttttcttgttgagctggacaagacaaacagttcttgaaagtaggcttcttgctttttcttacaagatctgtgagc |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6732128 |
aagagcatcaagtttcttctgaagcttttcttgttgagctggacaagacaaacaattcttgaaagtaggcttcttgctttttcttacaagatctgtgagc |
6732227 |
T |
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| Q |
318 |
tctcctgtgatagactctactatttctgtatcttca |
353 |
Q |
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||||||||||||| |||||||||||||||||||||| |
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| T |
6732228 |
tctcctgtgatagtctctactatttctgtatcttca |
6732263 |
T |
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