View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18772_low_12 (Length: 327)
Name: NF18772_low_12
Description: NF18772
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18772_low_12 |
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Alignment Details
Target: chr4 (Bit Score: 247; Significance: 1e-137; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 18 - 317
Target Start/End: Complemental strand, 6264854 - 6264553
Alignment:
| Q |
18 |
tatgtgagtgcttaacacacattattgtttgacgcttaacatt--tcattttcaaatgtgaatcaggtcatgacttgtagaccacgctcggatctctaca |
115 |
Q |
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| T |
6264854 |
tatgtgagtgcttaacacacattattgtttgatgcttaacactatttattttcatatttgaatcaggtcatgacttgtagaccacgctcggatctctaca |
6264755 |
T |
|
| Q |
116 |
tcaatctgccagctttgcgaaaattagataacatgcttcttgtaagatttttctacattttactcacattatttcagttttgtatccaaactttctaaac |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||| | ||||| |||||||| |||||||||||||||||| ||||||||| |
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| T |
6264754 |
tcaatctgccagctttgcgaaaattagataacatgcttcttgtaagatgtttcttccttttattcacattaattcagttttgtatccaaattttctaaac |
6264655 |
T |
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| Q |
216 |
attttctctttatacaggaaatactagacagttttgtcaatacagagttcaggtatgtagaccaaggtgttatggctcgcaatgaagacggttcatcttc |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6264654 |
attttctctttatacaggaaatactagacagttttgtcaatacagagttcaggtatgtagaccaaggtgttatggctcgcaatgaagacggttcatcttc |
6264555 |
T |
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| Q |
316 |
tt |
317 |
Q |
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|| |
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| T |
6264554 |
tt |
6264553 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 65; Significance: 1e-28; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 69 - 165
Target Start/End: Complemental strand, 23782632 - 23782536
Alignment:
| Q |
69 |
aaatgtgaatcaggtcatgacttgtagaccacgctcggatctctacatcaatctgccagctttgcgaaaattagataacatgcttcttgtaagattt |
165 |
Q |
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| T |
23782632 |
aaatgtgaatcaggtcatgacttgtcgaccacgctcagatctgtacgtcaatcttccagctctgcgcaagttagataacatgcttcttgtaagattt |
23782536 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 231 - 293
Target Start/End: Complemental strand, 23782456 - 23782394
Alignment:
| Q |
231 |
aggaaatactagacagttttgtcaatacagagttcaggtatgtagaccaaggtgttatggctc |
293 |
Q |
| |
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||||||| | ||| ||||||||| |||| |||||| |||||||||| ||||||||||| |||| |
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| T |
23782456 |
aggaaattcaagatagttttgtcgataccgagttctggtatgtagatcaaggtgttatagctc |
23782394 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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