View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18772_low_14 (Length: 298)
Name: NF18772_low_14
Description: NF18772
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18772_low_14 |
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Alignment Details
Target: chr1 (Bit Score: 174; Significance: 1e-93; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 80 - 273
Target Start/End: Complemental strand, 29318113 - 29317920
Alignment:
| Q |
80 |
ccccttaagttcaaggtgtgcctaaaaggaagcagagcgagtacatattacaggcaaagctaaaaacaataccaaaaactaaagcaagattttataaggg |
179 |
Q |
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| T |
29318113 |
ccccttaagctcaaggtgtgcctaaaaggaagcagagcaagtacatattacaggcaaagctaaaaacaataccaaaaactaaagcaagattttataaggg |
29318014 |
T |
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| Q |
180 |
agtataaccaatacaatccagatgattagaccaccatgagttgaagtcgtaaaaaagttaggaatgtgcgactccaaccaccatcaagaataat |
273 |
Q |
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| T |
29318013 |
agtataaccaatacaaaccagatgattagaccaccatgagttgaagtcgtaaaaaagttaggaatgtgcgtctccaaccaccaccaagaataat |
29317920 |
T |
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Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 92 - 248
Target Start/End: Original strand, 24480773 - 24480930
Alignment:
| Q |
92 |
aaggtgtgcctaaaaggaagcagagcgagtacatattacaggcaaagctaaaaacaatacca-aaaactaaagcaagattttataagggagtataaccaa |
190 |
Q |
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| T |
24480773 |
aaggtgtgcctaaaaggaagcataagaagtatacattacagac-aagctaaaaacaataacataaaacaaaagtaaaacattacaacggagcataaccca |
24480871 |
T |
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| Q |
191 |
tacaatccagatgattagaccaccatgagttgaagtcgtaaaaaa-gttaggaatgtgc |
248 |
Q |
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| T |
24480872 |
tacaaactagagcattagaagaccaggaattgaagtcgtaaaaaatgttaggaatgtgc |
24480930 |
T |
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