View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18772_low_15 (Length: 294)
Name: NF18772_low_15
Description: NF18772
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18772_low_15 |
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Alignment Details
Target: chr7 (Bit Score: 176; Significance: 8e-95; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 176; E-Value: 8e-95
Query Start/End: Original strand, 16 - 283
Target Start/End: Complemental strand, 35766975 - 35766714
Alignment:
| Q |
16 |
catttaaaatatccctaagtcattcaataattgattaatacaaaaaccaagcagttgatttcnnnnnnnnnnnnaccatagtcacacgatctgcaattcg |
115 |
Q |
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| T |
35766975 |
catttaaaatatccctaagtcattcaataattgattaatacaaaaaccaagcagttgattt-tttattttttttaccatagtcacacgatctgcaattcg |
35766877 |
T |
|
| Q |
116 |
attcggtacgcggtacaaattcaatgtaaaaagccagatgtttcagatttttgattaaatctgtttagatctggccattaaataagtatttattcttctc |
215 |
Q |
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|||||||| | |||||||||||||||||||||||||||||||| |||||||| |||||||| ||||||||||| |||||||||||||||||||||||||| |
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| T |
35766876 |
attcggtaagtggtacaaattcaatgtaaaaagccagatgtttaagattttttattaaatccgtttagatctgaccattaaataagtatttattcttctc |
35766777 |
T |
|
| Q |
216 |
catgagttttgcctgtttttcattcttttaatttgacacgttatgttagaattacattatagtttcat |
283 |
Q |
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||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
35766776 |
catgaattttgcctgtttttcattct-----tttgacacgttatgttagaattacattatagtttcat |
35766714 |
T |
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