View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18772_low_2 (Length: 708)

Name: NF18772_low_2
Description: NF18772
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18772_low_2
NF18772_low_2
[»] chr5 (1 HSPs)
chr5 (18-698)||(38724786-38725466)


Alignment Details
Target: chr5 (Bit Score: 640; Significance: 0; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 640; E-Value: 0
Query Start/End: Original strand, 18 - 698
Target Start/End: Complemental strand, 38725466 - 38724786
Alignment:
Q  18 ctacattctacctagataggatgcaaattaatcacttcactttccatccctcataacccaggcaaagaaaagattttggcaatggcctttgacataccaa 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38725466 ctacattctacctagataggatgcaaattaatcacttcactttccatccctcataacccaggcaaagaaaagattttggcaatggcctttgacataccaa 38725367  T
Q  118 tctcattttggtaaactcgcctgatacatcatctttactccatgtagttgattctgttgaatgcacagatttcatgtcaggtttcttcaccaaagagtgc 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38725366 tctcattttggtaaactcgcctgatacatcatctttactccatgtagttgattctgttgaatgcacagatttcatgtcaggtttcttcaccaaagagtgc 38725267  T
Q  218 ttctctaattctgnnnnnnnatcttctaacttttgttgagcactggctttacccttttttgaattcccaaagaaaaacttctttatactttctatcttct 317  Q
    |||||||||||||       ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38725266 ttctctaattctgtttttttatcttctaacttttgttgagcactggctttacccttttttgaattcccaaagaaaaacttctttatactttctatcttct 38725167  T
Q  318 tattccttttccaaaatccaccgcttttgttatcatctttctttatctccttagcaacattagaaaccaaagtcttctttgactcaagctcaaagtttgt 417  Q
    |||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38725166 tattccttttccaaaatccacctcttttgttctcatctttctttatctccttagcaacattagaaaccaaagtcttctttgactcaagctcaaagtttgt 38725067  T
Q  418 atcattagccacttccacttgtctcgtctgtcttgcaaatgccaatccttttggctcagataccatattttctctttctgattcttccttcattggctct 517  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38725066 atcattagccacttccacttgtctcgtctgtcttgcaaatgccaatccttttggctcagataccatattttctctttctgattcttccttcattggctct 38724967  T
Q  518 tccagaagctcgcgtaacatctgaccttctggaaaagacattaaaggaagtttttcacaacaatgcgattgatcatgtttatgtgactctgatagtccct 617  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38724966 tccagaagctcacgtaacatctgaccttctggaaaagacattaaaggaagtttttcacaacaatgcgattgatcatgtttatgtgactctgatagtccct 38724867  T
Q  618 catgtttgtcacatttactgttgaagaccctcaatggagaaagggatctagtccttcttaaaccatgttctctaccctttg 698  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  38724866 catgtttgtcacatttgctgttgaagaccctcaatggagaaagggatctagtccttcttaaaccatattctctaccctttg 38724786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University