View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18772_low_21 (Length: 227)
Name: NF18772_low_21
Description: NF18772
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18772_low_21 |
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| [»] chr4 (4 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 223; Significance: 1e-123; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 3651244 - 3651018
Alignment:
| Q |
1 |
catacaaataatttaatcattttcatatgatcaaaaccaatgcatctgccattgtttctctctaccaaaacctcaaactcgttggagttacggtccacca |
100 |
Q |
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| T |
3651244 |
catacaaataatttaatcattttcatatgatcaaaaccaatgcatctgccattgtttctctctaccaaaacctcaaactcattggagttacggtccacca |
3651145 |
T |
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| Q |
101 |
acactgcgtagcgaccaagttcgtccccaaagtcatggccaaacatgcttggcaaaacaaccatcccctaaaagtaaatagatgaagaatcagcatctta |
200 |
Q |
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| T |
3651144 |
acactgcgtagcgaccaagttcgtccccaaagtcatggccaaacatgcttggcaaaacaaccatcccctaaaagtaaatagatgaagaatcagcatctta |
3651045 |
T |
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| Q |
201 |
atcaatgaattttgtggaggtgataac |
227 |
Q |
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| T |
3651044 |
atcaatgaattttgtggaggtgataac |
3651018 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 49 - 167
Target Start/End: Original strand, 38466933 - 38467051
Alignment:
| Q |
49 |
ccattgtttctctctaccaaaacctcaaactcgttggagttacggtccaccaacactgcgtagcgaccaagttcgtccccaaagtcatggccaaacatgc |
148 |
Q |
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| T |
38466933 |
ccattgtttctctcaaccaaaacctcaaattcgttgtagttacggtccaccaacatagcatatcgaccaagttcatccccaaagtcatgaccaaaaaggg |
38467032 |
T |
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| Q |
149 |
ttggcaaaacaaccatccc |
167 |
Q |
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| T |
38467033 |
ttggcaatacaaccatccc |
38467051 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 50 - 212
Target Start/End: Complemental strand, 10196752 - 10196590
Alignment:
| Q |
50 |
cattgtttctctctaccaaaacctcaaactcgttggagttacggtccaccaacactgcgtagcgaccaagttcgtccccaaagtcatggccaaacatgct |
149 |
Q |
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| T |
10196752 |
cattgttcctctcgaccaaaacctcgaactcattatagttagaatccaccaaccttgcgtagcgtccaatttggcccccaaagtcatgaccaaagattct |
10196653 |
T |
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| Q |
150 |
tggcaaaacaaccatcccctaaaagtaaatagatgaagaatcagcatcttaatcaatgaattt |
212 |
Q |
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| T |
10196652 |
tagcgaaacaaccatgccctaatagtcaataaaagaagaaacaaaatgttaataaatgaattt |
10196590 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 108 - 178
Target Start/End: Complemental strand, 19462519 - 19462449
Alignment:
| Q |
108 |
gtagcgaccaagttcgtccccaaagtcatggccaaacatgcttggcaaaacaaccatcccctaaaagtaaa |
178 |
Q |
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| T |
19462519 |
gtagcgtccaatttggtctccaaagtcatggccaaacattcttggcaaaacaactatgccctaatagtaaa |
19462449 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 50; Significance: 9e-20; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 48 - 137
Target Start/End: Complemental strand, 35349772 - 35349683
Alignment:
| Q |
48 |
gccattgtttctctctaccaaaacctcaaactcgttggagttacggtccaccaacactgcgtagcgaccaagttcgtccccaaagtcatg |
137 |
Q |
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| T |
35349772 |
gccattgtttcgctcaaccaaaacctcaaattcgttgtagttacagtccaccaacatagcatatcgaccaagttcatccccaaagtcatg |
35349683 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 50 - 178
Target Start/End: Original strand, 31941764 - 31941891
Alignment:
| Q |
50 |
cattgtttctctctaccaaaacctcaaactcgttggagttacggtccaccaacactgcgtagcgaccaagttcgtccccaaagtcatggccaaacatgct |
149 |
Q |
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| T |
31941764 |
cattgttcctctcgaccaacacctcaaactcattgtagttagaatccaccagacttgcatagcgtccaatttggtctccaaagtcatgaccaaacattct |
31941863 |
T |
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| Q |
150 |
tggcaaaacaaccatcccctaaaagtaaa |
178 |
Q |
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| T |
31941864 |
tcgcaaaacaa-cattccctaatagtaaa |
31941891 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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