View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18772_low_22 (Length: 204)

Name: NF18772_low_22
Description: NF18772
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18772_low_22
NF18772_low_22
[»] chr1 (5 HSPs)
chr1 (10-185)||(48056456-48056631)
chr1 (141-185)||(48043369-48043413)
chr1 (10-86)||(48051132-48051207)
chr1 (10-84)||(48043227-48043304)
chr1 (142-185)||(48051312-48051355)


Alignment Details
Target: chr1 (Bit Score: 172; Significance: 1e-92; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 10 - 185
Target Start/End: Original strand, 48056456 - 48056631
Alignment:
Q  10 gaagaatattgtgaatctgaatggtatataagtaagtagactctctttgatacctttgatggtaaaccaagttatcatatgattttattaaaagctgttc 109  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48056456 gaagaatattgtgaatctgaatggtatataagtaagtagactctctttgatacctttgatggtaaaccaagttatcatatgattttattaaaagctgttc 48056555  T
Q  110 caaaatgaaaaactagtatgacacagacacgcaccaatatcatcccttcaatgaccttgatatcagtctgcaatgt 185  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48056556 caaaataaaaaactagtatgacacagacacgcaccaatatcatcccttcaatgaccttgatatcagtctgcaatgt 48056631  T

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Target: chr1; HSP #2
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 141 - 185
Target Start/End: Original strand, 48043369 - 48043413
Alignment:
Q  141 caccaatatcatcccttcaatgaccttgatatcagtctgcaatgt 185  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  48043369 caccaatatcatcccttcaatgaccttgatatcagtctgcaatgt 48043413  T

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Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 10 - 86
Target Start/End: Original strand, 48051132 - 48051207
Alignment:
Q  10 gaagaatattgtgaatctgaatggtatataagtaagtagactctctttgatacctttgatggtaaaccaagttatca 86  Q
    ||||||| ||||||| |||||||||| |||||||   | ||||||||||||||||||| |||||||||||| |||||    
T  48051132 gaagaatgttgtgaacctgaatggtaaataagtata-atactctctttgatacctttgttggtaaaccaagctatca 48051207  T

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Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 10 - 84
Target Start/End: Original strand, 48043227 - 48043304
Alignment:
Q  10 gaagaatattgtgaatctgaatggtatataagtaagtaga---ctctctttgatacctttgatggtaaaccaagttat 84  Q
    ||||||||||||||| ||| ||||||  ||| |||||| |   |||||||||||||||||| ||||||||| ||||||    
T  48043227 gaagaatattgtgaacctgtatggtaggtaaataagtataatactctctttgatacctttgttggtaaacctagttat 48043304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 142 - 185
Target Start/End: Original strand, 48051312 - 48051355
Alignment:
Q  142 accaatatcatcccttcaatgaccttgatatcagtctgcaatgt 185  Q
    ||||| |||||| |||||| ||||||||||||||||||||||||    
T  48051312 accaacatcatctcttcaaagaccttgatatcagtctgcaatgt 48051355  T

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