View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18772_low_3 (Length: 514)
Name: NF18772_low_3
Description: NF18772
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18772_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 388; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 388; E-Value: 0
Query Start/End: Original strand, 1 - 501
Target Start/End: Complemental strand, 49547103 - 49546601
Alignment:
| Q |
1 |
acttttaaattttggaagtattattacacaacatagatttcacgaaaccctctttagtacaatatttttagttcccccattttgagggaattttctgttg |
100 |
Q |
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| T |
49547103 |
acttttaaattttggaagtattattacacaacatagatttcacgaaaccctctttagtacaatatttttagttcccccattttaaggggattttctgttg |
49547004 |
T |
|
| Q |
101 |
caatgaaaaacaagccccctattcaaagccattccctttcctccttttttacccaaagtcattcactcccctccaaaatcacaaacaatgcct--aagaa |
198 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||| |
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| T |
49547003 |
caatgaaaaacaagccccctattcaaagccattccctttcctccttttttacccaaagccattcactcccctccaaaatcacaaacaatgcctaaaagaa |
49546904 |
T |
|
| Q |
199 |
taaatcatcataa-gnnnnnnncaagagactcccacattgtaatcattatgtcaggattcctcatttgtccttttcttttaacagatcctcctcctaatt |
297 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
49546903 |
taaatcatcataacaaaaaaaaaaagagactcccacattgtaatcattatgtcatgattcctcatttgtctttttcttttaacagatcctcctcctaatt |
49546804 |
T |
|
| Q |
298 |
cagttcatatannnnnnnnggctcattatccattaaacctaaggaagaaatactatggaatgatggactggccaaccccatttatagcactttattccaa |
397 |
Q |
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| T |
49546803 |
cagctcatattttttttttggctcattatccattaaacctaaagaagaaatactatggaatgatggactggccaaccccatttatagcactttattccaa |
49546704 |
T |
|
| Q |
398 |
tatatttttcaccccatactcattatattaggattctttattttccctgttttccaactcagcatacttctcattcagtccatcttcttccatttatcca |
497 |
Q |
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| T |
49546703 |
tata-ttttcaccccatactcattatattaggattctttattttccctgttttccaactcagcatacttctcattcagtccatcttcttccatttatcta |
49546605 |
T |
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| Q |
498 |
tctc |
501 |
Q |
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|||| |
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|
| T |
49546604 |
tctc |
49546601 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 425 - 503
Target Start/End: Complemental strand, 49443753 - 49443672
Alignment:
| Q |
425 |
ttaggattctttattttccctgttttccaactcagcatacttctcattcagtc---catcttcttccatttatccatctcat |
503 |
Q |
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| T |
49443753 |
ttaggattctttattttcccttttttccaactcaacatacttttcattcagcctatcctctttttccatttatctatctcat |
49443672 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 242 - 305
Target Start/End: Complemental strand, 49443948 - 49443886
Alignment:
| Q |
242 |
cattatgtcaggattcctcatttgtccttttcttttaacagatcctcctcctaattcagttcat |
305 |
Q |
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| T |
49443948 |
cattatgttaggattcctcattt-tctttttcttccaacagatcctcctcctcattcagctcat |
49443886 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 428 - 474
Target Start/End: Original strand, 14961990 - 14962036
Alignment:
| Q |
428 |
ggattctttattttccctgttttccaactcagcatacttctcattca |
474 |
Q |
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||||||||||||| |||| |||||| ||||||||||||||||||||| |
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| T |
14961990 |
ggattctttatttcccctattttcctactcagcatacttctcattca |
14962036 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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