View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18772_low_4 (Length: 501)
Name: NF18772_low_4
Description: NF18772
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18772_low_4 |
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Alignment Details
Target: chr8 (Bit Score: 235; Significance: 1e-130; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 1 - 340
Target Start/End: Complemental strand, 43016836 - 43016495
Alignment:
| Q |
1 |
attgtttacataaagactaattgaaaattattnnnnnnn-cgccaagacaaaattgaaaattactgatttcttcctcaaaaagtataaccgtgagtcaaa |
99 |
Q |
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| T |
43016836 |
attgtttatttaaagactaattgaaaattattaaaaaaaacgccaagacaaaattgaaaattatcgatttcttcctcaaaaagtttaaccgtgagtcaaa |
43016737 |
T |
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| Q |
100 |
ttattgtgattcataaaaatactatagactaannnnnnnncccacgctatagtttttta--gtagcgatgcaatcgcgatttgaattatgtctcaattgt |
197 |
Q |
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| T |
43016736 |
ttattatgattcataaaaatactatagactaattttttgcccc-cgctatagttttttttcgcagcgatgcaatcgcgacttgaattatgtctcaattgt |
43016638 |
T |
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| Q |
198 |
ttacataaagaaaattaaagagaaacaactacaagaagaatatttaagaagactaaattggaatggatgatgaataatacatacctgaaaattttcattt |
297 |
Q |
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| T |
43016637 |
ttacataaagaaaattaaagagaaacaactacaagaagaatatttaagaagactaaattggaatggatgatgaataatacatacctgaaaattttcattt |
43016538 |
T |
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| Q |
298 |
tgttggagcatgattgttgaaacatggtaagaattgtcatcaa |
340 |
Q |
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| T |
43016537 |
tgttggagcatgattgttgaaacatggtaagaattgtcatcaa |
43016495 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 402 - 479
Target Start/End: Complemental strand, 43016433 - 43016356
Alignment:
| Q |
402 |
aggcctacttatatggaaagctgcgtttgcactaatctgttggtgcacatgatgatcatgttgctgttgctgttgctg |
479 |
Q |
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| T |
43016433 |
aggcctacttatatggaaagctgcgtttgcactaatctgttggtgcacatgatgatcatgttgctgttgctgttgctg |
43016356 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 51 - 104
Target Start/End: Original strand, 43016834 - 43016887
Alignment:
| Q |
51 |
aattgaaaattactgatttcttcctcaaaaagtataaccgtgagtcaaattatt |
104 |
Q |
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| T |
43016834 |
aattgaaaattactgatttctttctcaaaaagtttaaccgtgagtcaaattatt |
43016887 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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