View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18772_low_5 (Length: 459)

Name: NF18772_low_5
Description: NF18772
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18772_low_5
NF18772_low_5
[»] scaffold0083 (3 HSPs)
scaffold0083 (105-304)||(50805-51005)
scaffold0083 (335-440)||(50690-50795)
scaffold0083 (13-73)||(51003-51063)
[»] chr5 (5 HSPs)
chr5 (105-303)||(26793277-26793486)
chr5 (105-280)||(26818793-26818979)
chr5 (23-73)||(26793227-26793279)
chr5 (23-73)||(26818743-26818795)
chr5 (386-425)||(26793517-26793555)
[»] chr3 (33 HSPs)
chr3 (105-303)||(10214694-10214903)
chr3 (105-303)||(10223435-10223644)
chr3 (105-302)||(10103758-10103966)
chr3 (177-292)||(10123641-10123755)
chr3 (177-292)||(10180295-10180409)
chr3 (177-292)||(10256410-10256524)
chr3 (261-425)||(11768325-11768494)
chr3 (354-425)||(10076299-10076370)
chr3 (346-425)||(10031125-10031204)
chr3 (13-73)||(10103698-10103760)
chr3 (13-73)||(10214634-10214696)
chr3 (340-425)||(9838029-9838114)
chr3 (340-425)||(9848907-9848992)
chr3 (240-292)||(10028802-10028854)
chr3 (13-73)||(10439062-10439124)
chr3 (340-425)||(9837824-9837907)
chr3 (340-425)||(9848702-9848785)
chr3 (340-425)||(10126060-10126145)
chr3 (23-73)||(10223385-10223437)
chr3 (346-425)||(10657930-10658006)
chr3 (34-73)||(10076227-10076266)
chr3 (340-425)||(10662639-10662721)
chr3 (364-425)||(10104042-10104100)
chr3 (386-425)||(10214934-10214972)
chr3 (386-425)||(10223675-10223713)
chr3 (35-73)||(10018949-10018987)
chr3 (105-146)||(10018985-10019026)
chr3 (105-146)||(10180184-10180225)
chr3 (105-146)||(10256299-10256340)
chr3 (346-425)||(10516630-10516706)
chr3 (390-425)||(10123754-10123790)
chr3 (390-425)||(10256523-10256559)
chr3 (359-415)||(10259874-10259930)
[»] chr2 (2 HSPs)
chr2 (14-73)||(26892383-26892444)
chr2 (14-73)||(26897822-26897883)


Alignment Details
Target: scaffold0083 (Bit Score: 169; Significance: 2e-90; HSPs: 3)
Name: scaffold0083
Description:

Target: scaffold0083; HSP #1
Raw Score: 169; E-Value: 2e-90
Query Start/End: Original strand, 105 - 304
Target Start/End: Complemental strand, 51005 - 50805
Alignment:
Q  105 ttagtaaatgc-tatatttttcagcaatgatatgctcatcagtagaaaagttatcgacataatctctagtacattatttttaattttgaacacagatgat 203  Q
    ||||||||||| |||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  51005 ttagtaaatgcatatatttttcagcaatgatatgctcatcagtaaaaaagttatcaacataatctctagtacattatttttaattttgaacacagatgat 50906  T
Q  204 aagaaaaatgacaacatgatacatttattttagtatatgagaggactttaactagaaattgcatatttgaatcacttaccaaaagtaaaaatatatataa 303  Q
    ||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||| |||||||    
T  50905 aagaaaaatgacaacatgatacatttattttcgtatatgagaggagtttaactagaaattgcatatttgaatcactttccaaaagtaaaaatgtatataa 50806  T
Q  304 t 304  Q
    |    
T  50805 t 50805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0083; HSP #2
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 335 - 440
Target Start/End: Complemental strand, 50795 - 50690
Alignment:
Q  335 gtgactgcaatttttcctttttcattgtatcaattattttgtaagatgtcggtccaatattaaccactgctgagctttgctttccagctttaaatacagt 434  Q
    ||||||||||||||||||||||| ||||||||||||||||||  ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50795 gtgactgcaatttttcctttttctttgtatcaattattttgtgggatgtgggtccaatattaaccactgctgagctttgctttccagctttaaatacagt 50696  T
Q  435 actgtt 440  Q
    ||||||    
T  50695 actgtt 50690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0083; HSP #3
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 13 - 73
Target Start/End: Complemental strand, 51063 - 51003
Alignment:
Q  13 aatatcatattttcttagaaagtgtgttttgaaatatcatttatattcaaaccttcattta 73  Q
    ||||||| || |||||||||||||||||||||||||||||||| |||||||||||||||||    
T  51063 aatatcacatgttcttagaaagtgtgttttgaaatatcatttacattcaaaccttcattta 51003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 111; Significance: 7e-56; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 111; E-Value: 7e-56
Query Start/End: Original strand, 105 - 303
Target Start/End: Original strand, 26793277 - 26793486
Alignment:
Q  105 ttagtaaatgctatatttttcagcaatgatatgctcatcagt----------agaaaagttatcgacataatctctagtacattatttttaattttgaac 194  Q
    |||||||||||||||||||||||||||||||| |||||||||          ||||| |||||| || |||||||||||| ||||||||||| ||| |||    
T  26793277 ttagtaaatgctatatttttcagcaatgatatactcatcagttatcacatttagaaaggttatcaacgtaatctctagtaaattatttttaaattttaac 26793376  T
Q  195 acagatgataagaaaaatgacaacatgatacattta-ttttagtatatgagaggactttaactagaaattgcatatttgaatcacttaccaaaagtaaaa 293  Q
    |||| |||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||| || || ||||||    
T  26793377 acaggtgataagaaaaatgacaatatgatacatttatttttagtatatgagaggactttaactagaaattgcatatttgactcactttcctaaggtaaaa 26793476  T
Q  294 atatatataa 303  Q
    || |||||||    
T  26793477 atgtatataa 26793486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 105 - 280
Target Start/End: Original strand, 26818793 - 26818979
Alignment:
Q  105 ttagtaaatgctatatttttcagcaatgatatgctcatcagt----------agaaaagttatcgacataatctctagtacattatttttaattttgaac 194  Q
    |||||||||||||||||||||||||||||||| |||||||||          ||||| |||||| || |||||||||||| ||||||||||| ||| |||    
T  26818793 ttagtaaatgctatatttttcagcaatgatatactcatcagttatcacatttagaaaggttatcaacgtaatctctagtaaattatttttaaattttaac 26818892  T
Q  195 acagatgataagaaaaatgacaacatgatacattta-ttttagtatatgagaggactttaactagaaattgcatatttgaatcactt 280  Q
    |||| |||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  26818893 acaggtgataagaaaaatgacaatatgatacatttatttttagtatatgagaggactttaactagaaattgcatatttgactcactt 26818979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 23 - 73
Target Start/End: Original strand, 26793227 - 26793279
Alignment:
Q  23 tttcttagaaagtgt--gttttgaaatatcatttatattcaaaccttcattta 73  Q
    |||||||||||||||  |||||||||||||||||| |||||||||||||||||    
T  26793227 tttcttagaaagtgtgtgttttgaaatatcatttacattcaaaccttcattta 26793279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 23 - 73
Target Start/End: Original strand, 26818743 - 26818795
Alignment:
Q  23 tttcttagaaagtgt--gttttgaaatatcatttatattcaaaccttcattta 73  Q
    |||||||||||||||  |||||||||||||||||| |||||||||||||||||    
T  26818743 tttcttagaaagtgtgtgttttgaaatatcatttacattcaaaccttcattta 26818795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 386 - 425
Target Start/End: Original strand, 26793517 - 26793555
Alignment:
Q  386 gtccaatattaaccactgctgagctttgctttccagcttt 425  Q
    ||||||||||||| ||||||||||||||||||||||||||    
T  26793517 gtccaatattaac-actgctgagctttgctttccagcttt 26793555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 111; Significance: 7e-56; HSPs: 33)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 111; E-Value: 7e-56
Query Start/End: Original strand, 105 - 303
Target Start/End: Original strand, 10214694 - 10214903
Alignment:
Q  105 ttagtaaatgctatatttttcagcaatgatatgctcatcagt----------agaaaagttatcgacataatctctagtacattatttttaattttgaac 194  Q
    |||||||||||||||||||||||||||||||| |||||||||          ||||| |||||| || |||||||||||| ||||||||||| ||| |||    
T  10214694 ttagtaaatgctatatttttcagcaatgatatactcatcagttatcacatttagaaaggttatcaacgtaatctctagtaaattatttttaaattttaac 10214793  T
Q  195 acagatgataagaaaaatgacaacatgatacattta-ttttagtatatgagaggactttaactagaaattgcatatttgaatcacttaccaaaagtaaaa 293  Q
    |||| |||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||| || || ||||||    
T  10214794 acaggtgataagaaaaatgacaatatgatacatttatttttagtatatgagaggactttaactagaaattgcatatttgactcactttcctaaggtaaaa 10214893  T
Q  294 atatatataa 303  Q
    || |||||||    
T  10214894 atgtatataa 10214903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 111; E-Value: 7e-56
Query Start/End: Original strand, 105 - 303
Target Start/End: Original strand, 10223435 - 10223644
Alignment:
Q  105 ttagtaaatgctatatttttcagcaatgatatgctcatcagt----------agaaaagttatcgacataatctctagtacattatttttaattttgaac 194  Q
    |||||||||||||||||||||||||||||||| |||||||||          ||||| |||||| || |||||||||||| ||||||||||| ||| |||    
T  10223435 ttagtaaatgctatatttttcagcaatgatatactcatcagttatcacatttagaaaggttatcaacgtaatctctagtaaattatttttaaattttaac 10223534  T
Q  195 acagatgataagaaaaatgacaacatgatacattta-ttttagtatatgagaggactttaactagaaattgcatatttgaatcacttaccaaaagtaaaa 293  Q
    |||| |||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||| || || ||||||    
T  10223535 acaggtgataagaaaaatgacaatatgatacatttatttttagtatatgagaggactttaactagaaattgcatatttgactcactttcctaaggtaaaa 10223634  T
Q  294 atatatataa 303  Q
    || |||||||    
T  10223635 atgtatataa 10223644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 105 - 302
Target Start/End: Original strand, 10103758 - 10103966
Alignment:
Q  105 ttagtaaatgctatatttttcagcaatgatatgctcatcagt----------agaaaagttatcgacataatctctagtacattatttttaattttgaac 194  Q
    |||||||||||||||||||||||||||||||| |||||||||          ||||| |||||| || |||||||||||| ||||||||||| ||| |||    
T  10103758 ttagtaaatgctatatttttcagcaatgatatactcatcagttatcacatttagaaaggttatcaacgtaatctctagtaaattatttttaaattttaac 10103857  T
Q  195 acagatgataagaaaaatgacaacatgatacattta-ttttagtatatgagaggactttaactagaaattgcatatttgaatcacttaccaaaagtaaaa 293  Q
    |||| |||||||||||||||||| |||||||||||| |||||||||||||||||| |||||||||||||||||||||||| |||||| || |||||||||    
T  10103858 acaggtgataagaaaaatgacaatatgatacatttatttttagtatatgagaggaatttaactagaaattgcatatttgactcactttcctaaagtaaaa 10103957  T
Q  294 atatatata 302  Q
    || ||||||    
T  10103958 atgtatata 10103966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 177 - 292
Target Start/End: Original strand, 10123641 - 10123755
Alignment:
Q  177 ttatttttaattttgaacacagatgataagaaaaatgacaacatgatacatttatttt-agtatatgagaggactttaactagaaattgcatatttgaat 275  Q
    |||||||||||||| ||||||| |||||||||||||||||  ||| |||||||||||| ||||||||||||||||||||| |||||||||||||||||||    
T  10123641 ttatttttaatttt-aacacaggtgataagaaaaatgacat-atgctacatttatttttagtatatgagaggactttaacgagaaattgcatatttgaat 10123738  T
Q  276 cacttaccaaaagtaaa 292  Q
    ||||| || ||||||||    
T  10123739 cactttcctaaagtaaa 10123755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 177 - 292
Target Start/End: Original strand, 10180295 - 10180409
Alignment:
Q  177 ttatttttaattttgaacacagatgataagaaaaatgacaacatgatacatttatttt-agtatatgagaggactttaactagaaattgcatatttgaat 275  Q
    |||||||||||||| ||||||| |||||||||||||||||  ||| |||||||||||| ||||||||||||||||||||| |||||||||||||||||||    
T  10180295 ttatttttaatttt-aacacaggtgataagaaaaatgacat-atgctacatttatttttagtatatgagaggactttaacgagaaattgcatatttgaat 10180392  T
Q  276 cacttaccaaaagtaaa 292  Q
    ||||| || ||||||||    
T  10180393 cactttcctaaagtaaa 10180409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 177 - 292
Target Start/End: Original strand, 10256410 - 10256524
Alignment:
Q  177 ttatttttaattttgaacacagatgataagaaaaatgacaacatgatacatttatttt-agtatatgagaggactttaactagaaattgcatatttgaat 275  Q
    |||||||||||||| ||||||| |||||||||||||||||  ||| ||| |||||||| ||||||||||||||||||||| |||||||||||||||||||    
T  10256410 ttatttttaatttt-aacacaggtgataagaaaaatgacat-atgctacgtttatttttagtatatgagaggactttaacgagaaattgcatatttgaat 10256507  T
Q  276 cacttaccaaaagtaaa 292  Q
    ||||| || ||||||||    
T  10256508 cactttcctaaagtaaa 10256524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 261 - 425
Target Start/End: Original strand, 11768325 - 11768494
Alignment:
Q  261 attgcatatttgaatcacttaccaaaagtaaaaatatatataat-tatatgctatttaa-gattccgatggttttagtgac---tgcaatttttcctttt 355  Q
    |||||||||||||||||||| |||||||||||||| |||||||  ||| |||||||||| |||| |||||  |||| | |    ||||| ||||||||||    
T  11768325 attgcatatttgaatcactttccaaaagtaaaaatgtatataaagtatctgctatttaaagatttcgatgcctttaattaagtgtgcaacttttcctttt 11768424  T
Q  356 tcattgtatcaattattttgtaagatgtcggtccaatattaaccactgctgagctttgctttccagcttt 425  Q
    || ||||||||||||||||||  ||||| |||||||||||||||| || ||| ||||||||||| |||||    
T  11768425 tctttgtatcaattattttgtgggatgtaggtccaatattaaccaatggtgaactttgctttcccgcttt 11768494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 354 - 425
Target Start/End: Original strand, 10076299 - 10076370
Alignment:
Q  354 tttcattgtatcaattattttgtaagatgtcggtccaatattaaccactgctgagctttgctttccagcttt 425  Q
    |||| ||||||||||||||||||  ||||| |||||||||||||||||| ||||||||| ||||||||||||    
T  10076299 tttccttgtatcaattattttgtgggatgtgggtccaatattaaccactactgagctttactttccagcttt 10076370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 346 - 425
Target Start/End: Original strand, 10031125 - 10031204
Alignment:
Q  346 ttttcctttttcattgtatcaattattttgtaagatgtcggtccaatattaaccactgctgagctttgctttccagcttt 425  Q
    |||| ||||||| |||||||||||||||||   ||||| ||||||||||||| || || |||||||||||||||||||||    
T  10031125 tttttctttttctttgtatcaattattttgagggatgtgggtccaatattaaacaatgatgagctttgctttccagcttt 10031204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 13 - 73
Target Start/End: Original strand, 10103698 - 10103760
Alignment:
Q  13 aatatcatattttcttagaaagtgt--gttttgaaatatcatttatattcaaaccttcattta 73  Q
    ||||||||| |||||||||||||||  |||||||||||||||||| |||||||||||||||||    
T  10103698 aatatcatactttcttagaaagtgtgtgttttgaaatatcatttacattcaaaccttcattta 10103760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 13 - 73
Target Start/End: Original strand, 10214634 - 10214696
Alignment:
Q  13 aatatcatattttcttagaaagtgt--gttttgaaatatcatttatattcaaaccttcattta 73  Q
    ||||||||| |||||||||||||||  |||||||||||||||||| |||||||||||||||||    
T  10214634 aatatcatactttcttagaaagtgtgtgttttgaaatatcatttacattcaaaccttcattta 10214696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 340 - 425
Target Start/End: Original strand, 9838029 - 9838114
Alignment:
Q  340 tgcaatttttcctttttcattgtatcaattattttgtaagatgtcggtccaatattaaccactgctgagctttgctttccagcttt 425  Q
    ||||| |||| ||||||| |||||||||||||||||   ||||| ||||||||||||| || || | |||||||||||||||||||    
T  9838029 tgcaactttttctttttctttgtatcaattattttgagggatgtgggtccaatattaaacaatgttaagctttgctttccagcttt 9838114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 340 - 425
Target Start/End: Original strand, 9848907 - 9848992
Alignment:
Q  340 tgcaatttttcctttttcattgtatcaattattttgtaagatgtcggtccaatattaaccactgctgagctttgctttccagcttt 425  Q
    ||||| |||| ||||||| |||||||||||||||||   ||||| ||||||||||||| || || | |||||||||||||||||||    
T  9848907 tgcaactttttctttttctttgtatcaattattttgagggatgtgggtccaatattaaacaatgttaagctttgctttccagcttt 9848992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 240 - 292
Target Start/End: Original strand, 10028802 - 10028854
Alignment:
Q  240 atgagaggactttaactagaaattgcatatttgaatcacttaccaaaagtaaa 292  Q
    |||||||||||||||| |||||||||||||||||||||||| || ||||||||    
T  10028802 atgagaggactttaacgagaaattgcatatttgaatcactttcctaaagtaaa 10028854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 13 - 73
Target Start/End: Complemental strand, 10439124 - 10439062
Alignment:
Q  13 aatatcatattttcttagaaagtgtgt--tttgaaatatcatttatattcaaaccttcattta 73  Q
    |||||||||||||||||| ||||||||  ||||||||||||||||  ||||||||||||||||    
T  10439124 aatatcatattttcttagcaagtgtgtgttttgaaatatcatttacgttcaaaccttcattta 10439062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 340 - 425
Target Start/End: Original strand, 9837824 - 9837907
Alignment:
Q  340 tgcaatttttcctttttcattgtatcaattattttgtaagatgtcggtccaatattaaccactgctgagctttgctttccagcttt 425  Q
    ||||| |||||||||||| ||| ||||||||||||||  ||||| ||||||||||||| || ||   |||||||||||||||||||    
T  9837824 tgcaacttttcctttttctttgcatcaattattttgtgggatgtgggtccaatattaaacaatg--aagctttgctttccagcttt 9837907  T

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Target: chr3; HSP #17
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 340 - 425
Target Start/End: Original strand, 9848702 - 9848785
Alignment:
Q  340 tgcaatttttcctttttcattgtatcaattattttgtaagatgtcggtccaatattaaccactgctgagctttgctttccagcttt 425  Q
    ||||| |||||||||||| ||| ||||||||||||||  ||||| ||||||||||||| || ||   |||||||||||||||||||    
T  9848702 tgcaacttttcctttttctttgcatcaattattttgtgggatgtgggtccaatattaaacaatg--aagctttgctttccagcttt 9848785  T

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Target: chr3; HSP #18
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 340 - 425
Target Start/End: Original strand, 10126060 - 10126145
Alignment:
Q  340 tgcaatttttcctttttcattgtatcaattattttgtaagatgtcggtccaatattaaccactgctgagctttgctttccagcttt 425  Q
    ||||| |||| ||||| | |||||||||||||||||   ||||| ||||||||||||| || || ||| |||||||||||||||||    
T  10126060 tgcaactttttcttttgctttgtatcaattattttgagggatgtgggtccaatattaaacaatgatgacctttgctttccagcttt 10126145  T

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Target: chr3; HSP #19
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 23 - 73
Target Start/End: Original strand, 10223385 - 10223437
Alignment:
Q  23 tttcttagaaagtgt--gttttgaaatatcatttatattcaaaccttcattta 73  Q
    |||||||||||||||  |||||||||||||||||| |||||||||||||||||    
T  10223385 tttcttagaaagtgtgtgttttgaaatatcatttacattcaaaccttcattta 10223437  T

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Target: chr3; HSP #20
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 346 - 425
Target Start/End: Original strand, 10657930 - 10658006
Alignment:
Q  346 ttttcctttttcattgtatcaattattttgtaagatgtcggtccaatattaaccactgctgagctttgctttccagcttt 425  Q
    |||||||||||| ||||||||||||||||| | ||||| |||||   ||||| ||||| ||| |||||||||||||||||    
T  10657930 ttttcctttttctttgtatcaattattttgaaggatgtgggtcc---attaatcactgatgacctttgctttccagcttt 10658006  T

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Target: chr3; HSP #21
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 34 - 73
Target Start/End: Original strand, 10076227 - 10076266
Alignment:
Q  34 gtgtgttttgaaatatcatttatattcaaaccttcattta 73  Q
    |||||||||||||||||||||| |||||||||||||||||    
T  10076227 gtgtgttttgaaatatcatttacattcaaaccttcattta 10076266  T

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Target: chr3; HSP #22
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 340 - 425
Target Start/End: Original strand, 10662639 - 10662721
Alignment:
Q  340 tgcaatttttcctttttcattgtatcaattattttgtaagatgtcggtccaatattaaccactgctgagctttgctttccagcttt 425  Q
    ||||| |||||||||||| |||||| |||||||||| | ||||| |||||   ||||| ||||| ||| |||||||||||||||||    
T  10662639 tgcaacttttcctttttctttgtattaattattttgaaggatgtgggtcc---attaatcactgatgaactttgctttccagcttt 10662721  T

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Target: chr3; HSP #23
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 364 - 425
Target Start/End: Original strand, 10104042 - 10104100
Alignment:
Q  364 tcaattattttgtaagatgtcggtccaatattaaccactgctgagctttgctttccagcttt 425  Q
    |||||||||||||  |||||  ||||||||||||| ||||||||||||||||||||||||||    
T  10104042 tcaattattttgtgggatgt--gtccaatattaac-actgctgagctttgctttccagcttt 10104100  T

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Target: chr3; HSP #24
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 386 - 425
Target Start/End: Original strand, 10214934 - 10214972
Alignment:
Q  386 gtccaatattaaccactgctgagctttgctttccagcttt 425  Q
    ||||||||||||| ||||||||||||||||||||||||||    
T  10214934 gtccaatattaac-actgctgagctttgctttccagcttt 10214972  T

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Target: chr3; HSP #25
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 386 - 425
Target Start/End: Original strand, 10223675 - 10223713
Alignment:
Q  386 gtccaatattaaccactgctgagctttgctttccagcttt 425  Q
    ||||||||||||| ||||||||||||||||||||||||||    
T  10223675 gtccaatattaac-actgctgagctttgctttccagcttt 10223713  T

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Target: chr3; HSP #26
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 35 - 73
Target Start/End: Original strand, 10018949 - 10018987
Alignment:
Q  35 tgtgttttgaaatatcatttatattcaaaccttcattta 73  Q
    |||||||||||||||||||||  ||||||||||||||||    
T  10018949 tgtgttttgaaatatcatttacgttcaaaccttcattta 10018987  T

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Target: chr3; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 105 - 146
Target Start/End: Original strand, 10018985 - 10019026
Alignment:
Q  105 ttagtaaatgctatatttttcagcaatgatatgctcatcagt 146  Q
    ||||||||||||||| ||||||| |||||||| |||||||||    
T  10018985 ttagtaaatgctataattttcagtaatgatatactcatcagt 10019026  T

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Target: chr3; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 105 - 146
Target Start/End: Original strand, 10180184 - 10180225
Alignment:
Q  105 ttagtaaatgctatatttttcagcaatgatatgctcatcagt 146  Q
    ||||||||||||||| ||||||| |||||||| |||||||||    
T  10180184 ttagtaaatgctataattttcagtaatgatatactcatcagt 10180225  T

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Target: chr3; HSP #29
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 105 - 146
Target Start/End: Original strand, 10256299 - 10256340
Alignment:
Q  105 ttagtaaatgctatatttttcagcaatgatatgctcatcagt 146  Q
    ||||||||||||||| ||||||| |||||||| |||||||||    
T  10256299 ttagtaaatgctataattttcagtaatgatatactcatcagt 10256340  T

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Target: chr3; HSP #30
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 346 - 425
Target Start/End: Original strand, 10516630 - 10516706
Alignment:
Q  346 ttttcctttttcattgtatcaattattttgtaagatgtcggtccaatattaaccactgctgagctttgctttccagcttt 425  Q
    |||||||||||| ||||||||||||||||| | ||||| |||||   | ||| ||||| ||| || ||||||||||||||    
T  10516630 ttttcctttttctttgtatcaattattttgaaggatgtgggtcc---agtaatcactgatgacctatgctttccagcttt 10516706  T

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Target: chr3; HSP #31
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 390 - 425
Target Start/End: Original strand, 10123754 - 10123790
Alignment:
Q  390 aatattaaccactgctgagc-tttgctttccagcttt 425  Q
    |||||||||||||||||||| ||||||||||||||||    
T  10123754 aatattaaccactgctgagcttttgctttccagcttt 10123790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 390 - 425
Target Start/End: Original strand, 10256523 - 10256559
Alignment:
Q  390 aatattaaccactgctgagc-tttgctttccagcttt 425  Q
    |||||||||||||||||||| ||||||||||||||||    
T  10256523 aatattaaccactgctgagcttttgctttccagcttt 10256559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 359 - 415
Target Start/End: Original strand, 10259874 - 10259930
Alignment:
Q  359 ttgtatcaattattttgtaagatgtcggtccaatattaaccactgctgagctttgct 415  Q
    ||||||||||||||||| | ||||| ||||||||||||| || || ||| |||||||    
T  10259874 ttgtatcaattattttgaaggatgtgggtccaatattaaacaatgatgacctttgct 10259930  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 14 - 73
Target Start/End: Original strand, 26892383 - 26892444
Alignment:
Q  14 atatcatattttcttagaaagt--gtgttttgaaatatcatttatattcaaaccttcattta 73  Q
    ||||||||||||||||| ||||  |||||||||||| |||||||  ||||||||||| ||||    
T  26892383 atatcatattttcttagcaagtctgtgttttgaaatgtcatttacgttcaaaccttctttta 26892444  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 14 - 73
Target Start/End: Original strand, 26897822 - 26897883
Alignment:
Q  14 atatcatattttcttagaaagt--gtgttttgaaatatcatttatattcaaaccttcattta 73  Q
    ||||||||||||||||| ||||  |||||||||||| |||||||  ||||||||||| ||||    
T  26897822 atatcatattttcttagcaagtctgtgttttgaaatgtcatttacgttcaaaccttctttta 26897883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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