View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18772_low_9 (Length: 386)
Name: NF18772_low_9
Description: NF18772
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18772_low_9 |
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Alignment Details
Target: chr5 (Bit Score: 230; Significance: 1e-127; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 16 - 317
Target Start/End: Complemental strand, 41221756 - 41221451
Alignment:
| Q |
16 |
cttactcttatacacttgtacacgacagtaatacatgattgcaatgaaatttaatttaccattttatactcaagcaataacaaataataatattttgctc |
115 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||| |
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| T |
41221756 |
cttactcttatacacttgtacacgacagtaatacatgattgcaatgaaatttaatttaccattttatactcaagcaataacaaataatatttttttgctc |
41221657 |
T |
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| Q |
116 |
ttt-------tggatttttctgctcacgcctcagaacaacaagtatcaagcccacatgtcatccttcgatcagatcttatttcctttcagtgttatattg |
208 |
Q |
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||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
41221656 |
tttcatatgttggatttttctgctcacgcctcagaacaacaagtatcaagcccacatgtcatccttc----agatcttatttcctttcagtgttatattg |
41221561 |
T |
|
| Q |
209 |
aatttaaatatgctatcgannnnnnngttgctaaatgtctgatgtgaagaagcttatgacgaaagttgataaagaaattattgatc-tttaacattgtca |
307 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
41221560 |
aatttaaatatgctatcgatttttttgttgctaaatgtctgatgtgaagaagcttatgacgaaagttgataaagaaattattgatcttttaacattgtca |
41221461 |
T |
|
| Q |
308 |
tttgatattt |
317 |
Q |
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|||||||||| |
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| T |
41221460 |
tttgatattt |
41221451 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 312 - 374
Target Start/End: Complemental strand, 41216346 - 41216284
Alignment:
| Q |
312 |
atatttgttaacgtgttaagtgtaaatcatagataggattgattggaatttgagttgtatttt |
374 |
Q |
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| T |
41216346 |
atatttgtttacgtattaagtgtaaatcatagataggattgattggaatttgagttgtatttt |
41216284 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 67; Significance: 1e-29; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 251 - 374
Target Start/End: Original strand, 21757220 - 21757335
Alignment:
| Q |
251 |
tgtgaagaagcttatgacgaaagttgataaagaaattattgatctttaacattgtcatttgatatttgttaacgtgttaagtgtaaatcatagataggat |
350 |
Q |
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||||| |||| ||||| |||||||||||||||||||||||| | ||||| ||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
21757220 |
tgtgatgaagtttatgtcgaaagttgataaagaaattattgtt--------ttgtcgtttgatatttgttaacgtgttaagtgtaaatcatagaaaggat |
21757311 |
T |
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| Q |
351 |
tgattggaatttgagttgtatttt |
374 |
Q |
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| T |
21757312 |
taattggaatttgagttgtatttt |
21757335 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 45; Significance: 2e-16; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 118 - 162
Target Start/End: Complemental strand, 7313802 - 7313758
Alignment:
| Q |
118 |
ttggatttttctgctcacgcctcagaacaacaagtatcaagccca |
162 |
Q |
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| T |
7313802 |
ttggatttttctgctcacgcctcagaacaacaagtatcaagccca |
7313758 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 258 - 322
Target Start/End: Complemental strand, 25760919 - 25760855
Alignment:
| Q |
258 |
aagcttatgacgaaagttgataaagaaattattgatctttaacattgtcatttgatatttgttaa |
322 |
Q |
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| T |
25760919 |
aagcttatgtctgaagttgataaagaaattattgatctttaaaggtgtcatttgatatttgttaa |
25760855 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 258 - 322
Target Start/End: Complemental strand, 16706601 - 16706537
Alignment:
| Q |
258 |
aagcttatgacgaaagttgataaagaaattattgatctttaacattgtcatttgatatttgttaa |
322 |
Q |
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||||||||| | ||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
16706601 |
aagcttatgtctgaagttgataaagaaattattgatctttaaaggtgtcatttgatatttgttaa |
16706537 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 258 - 322
Target Start/End: Original strand, 21601350 - 21601414
Alignment:
| Q |
258 |
aagcttatgacgaaagttgataaagaaattattgatctttaacattgtcatttgatatttgttaa |
322 |
Q |
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||||||||| | ||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
21601350 |
aagcttatgtctgaagttgataaagaaattattgatctttaaaggtgtcatttgatatttgttaa |
21601414 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 271 - 322
Target Start/End: Original strand, 8797008 - 8797059
Alignment:
| Q |
271 |
aagttgataaagaaattattgatctttaacattgtcatttgatatttgttaa |
322 |
Q |
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||||||||||||||| |||||||||||| |||| |||||||||||||||| |
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| T |
8797008 |
aagttgataaagaaacgattgatctttaaagttgttatttgatatttgttaa |
8797059 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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