View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18773_high_1 (Length: 816)
Name: NF18773_high_1
Description: NF18773
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18773_high_1 |
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Alignment Details
Target: chr5 (Bit Score: 568; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 568; E-Value: 0
Query Start/End: Original strand, 104 - 800
Target Start/End: Complemental strand, 14901840 - 14901147
Alignment:
| Q |
104 |
ttgtttatttgagatgctcattgtaga--aacaatgaatatgaatatgactgatattagttcaattctaaccaaataatacat--gagttgaataataca |
199 |
Q |
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| T |
14901840 |
ttgtttatttgagatgctcattgtagataaacaatgaatatgaatatcactgatattagttcaatcctaaccaaataatacatttgagttgaataataca |
14901741 |
T |
|
| Q |
200 |
aataaaatcaactataaaaaactcaaagtggctcgtgacatttaagctaatgacatttactatgattgatttctcacaactgttattccaaacacaatac |
299 |
Q |
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| T |
14901740 |
aataaaatcaactatgaaaaactcaaagtggctcgtgacatttaagctaatgacatttactatgattgatttctcacaactgttattccaaacacaatac |
14901641 |
T |
|
| Q |
300 |
acactcaacttaaaaagagttcatcatttgaacaaagtatcaagggttcttaatctttattctcaacttcctagcaatctgtgctgctttaggatggcta |
399 |
Q |
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| T |
14901640 |
acactcaacttaaaaa-------tcatttgaacaacgtatcaagggttcttaatctttattctcaacttccgagcaatctgtgctgctttaggatggcta |
14901548 |
T |
|
| Q |
400 |
ggccttttattactatggtattgttctacctcaacccagttcataactttaagtataagtgattgagggactttacgaacatccccttttgatgcttcct |
499 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
14901547 |
ggcctcttattactatggtattgttctacctcaacccagttcataactttaagtataagtgattgagggactttacgaacatccccttttgactcttcct |
14901448 |
T |
|
| Q |
500 |
ttcnnnnnnncaaaccagcttccaaagccttctcgatgaattccataaaccaattcccagcttctgtttcaatctgttttcccaacttgactgtgttgct |
599 |
Q |
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|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14901447 |
ttgtttttttcaaaccagcttccaaagccttctcgatgaattccataaaccaattcccagcttctgtttcaatctgttttcccaacttgactgtgttgct |
14901348 |
T |
|
| Q |
600 |
taagctgcaagatactggtttcttattctcatcattttcaacaattggttccaagatagaacctttcttctccaaaatctccttttgatttgtacttgat |
699 |
Q |
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| T |
14901347 |
taagctgcaagatactggtttcttgttctcatcattttcaacaattggttccaaggtagaacctttcttctccaaaatctccttttgattagtacttgat |
14901248 |
T |
|
| Q |
700 |
gactgcagcagctttcccatttttcctttataaacacaccttctttttgacacgtttgattcagtagagtttcctgattggtctatggaattttgcataa |
799 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||| ||||||||| |||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
14901247 |
gacttcagcagctttcccatttttcctttataaacacaccttcgttttgacacatttgattcggtagagtttcctgattggtctatggaattttgcataa |
14901148 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 271 - 797
Target Start/End: Complemental strand, 14908442 - 14907926
Alignment:
| Q |
271 |
tctcacaactgttattccaaacacaatacacactcaacttaaaaagagttcatcat---ttgaacaaagtatcaagggttcttaatctttattctcaact |
367 |
Q |
| |
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|||||||||| |||||||||||||||||||||||||| || |||| |||||||||| |||||||||||||||||||||||||| ||||||||| |||| |
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| T |
14908442 |
tctcacaactattattccaaacacaatacacactcaagttgaaaatagttcatcatcgtttgaacaaagtatcaagggttcttaacctttattcttaact |
14908343 |
T |
|
| Q |
368 |
tcctagcaatctgtgctgctttaggatggctaggccttttattactatggtattgttctacctcaacccagttcataactttaagtataagtgattgagg |
467 |
Q |
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| T |
14908342 |
tccgagcaatctgtgctgctttaggatggctaggccttttattactatggtattgttctacctcaacccagttcataactttaagtataagtgattgagg |
14908243 |
T |
|
| Q |
468 |
gactttacgaacatccccttttgatgcttcctttcnnnnnnncaaaccagcttccaaagccttctcgatgaattccataaaccaattcccagcttctgtt |
567 |
Q |
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| T |
14908242 |
gactttacgaacatccccttttgacgcttcctttgtttttttcaaaccagcttccaaagccttctcgatgaattccataaaccaattcccagcttctgtt |
14908143 |
T |
|
| Q |
568 |
tcaatctgttttcccaacttgact-gtgttgcttaagctgcaagatactggtttcttattctcatcattttcaacaattggttccaagatagaacctttc |
666 |
Q |
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| T |
14908142 |
tcaatctgttttcccaacttaattggtgttgcttaagctgcaagatactggtttcttattctcatcattttcaacaataggttctgagatagaacttttc |
14908043 |
T |
|
| Q |
667 |
ttctccaaaatctccttttgatttgtacttgatgactgcagcagctttcccatttttcctttataaacacaccttctttttgacacgtttgattcagtag |
766 |
Q |
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|||||| ||||||||||||||||||||||||| || | ||||||||||||||||| |||||||||||||| ||||||||||||| |
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| T |
14908042 |
ttctccgaaatctccttttgatttgtacttgaaatctcc--------------ttttcctttataaacacgccttctttttgacatgtttgattcagtaa |
14907957 |
T |
|
| Q |
767 |
agtttcctgattggtctatggaattttgcat |
797 |
Q |
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| T |
14907956 |
agtttcctgattggtctgtggaattttgcat |
14907926 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 183 - 264
Target Start/End: Complemental strand, 14913014 - 14912933
Alignment:
| Q |
183 |
atgagttgaataatacaaataaaatcaactataaaaaactcaaagtggctcgtgacatttaagctaatgacatttactatga |
264 |
Q |
| |
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|||| ||||||||| ||||| |||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||| |
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| T |
14913014 |
atgaattgaataattcaaatgaaatcaactataaaaaactcaaagtggctcgtgacattcaagctactgacatttactatga |
14912933 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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