View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18773_high_11 (Length: 404)
Name: NF18773_high_11
Description: NF18773
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18773_high_11 |
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Alignment Details
Target: chr1 (Bit Score: 368; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 368; E-Value: 0
Query Start/End: Original strand, 11 - 386
Target Start/End: Original strand, 45715169 - 45715544
Alignment:
| Q |
11 |
cacagaacaattcccaagctcaggtggaatcacacctgaaaaccggtttgccgaaagcaaaagagaatcaatattactccacttcccaagccaagaaggc |
110 |
Q |
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| T |
45715169 |
cacagaacaattcccaagctcaggtggaatcacacctgaaaaccggtttgccgaaagcaaaagagaatcaatattactccacttcccaagccaagaaggc |
45715268 |
T |
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| Q |
111 |
aaaggaccatgaagaagattcttttcagctgaaaatgtcttaataggaagcatagaaagctcttgaggcaatgacccagataatgaattaaaggaaagca |
210 |
Q |
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| T |
45715269 |
aaaggaccatgaagaagattcttttcagctgaaaatgtcttaataggaagcatagaaagctcttgaggcaatgacccagataatgaattaaaagaaagca |
45715368 |
T |
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| Q |
211 |
tcacattagtcaaatttgaacaatttccaagctcggatggaactgacccattaagctcagaaaaaacaaggttcaaaatttccaaatttttcaacttccc |
310 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45715369 |
tcacattagtcaaatttgaacaatttccaagctcggatggaactgacccattaagctcagaaaaaacaaggttcaaaatttccaaatttttcaacttccc |
45715468 |
T |
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| Q |
311 |
aataaactttggaatagaacaccttaaagggttataagaaagatcaagctttgtcaacaattcaaggttttccatt |
386 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
45715469 |
aataaactttggaatagaacaccttaaagggttataagaaagatcgagctttgtcaacaattcaaggttttccatt |
45715544 |
T |
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