View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18773_high_12 (Length: 310)
Name: NF18773_high_12
Description: NF18773
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18773_high_12 |
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Alignment Details
Target: chr8 (Bit Score: 300; Significance: 1e-169; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 300; E-Value: 1e-169
Query Start/End: Original strand, 1 - 300
Target Start/End: Original strand, 4145371 - 4145670
Alignment:
| Q |
1 |
aaactatcccagattgttgctccagaattgatgtctcttagaatcaagttccctgcatcatcaagtttagctgttgaatttgttgaagatgaaatgtttg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4145371 |
aaactatcccagattgttgctccagaattgatgtctcttagaatcaagttccctgcatcatcaagtttagctgttgaatttgttgaagatgaaatgtttg |
4145470 |
T |
|
| Q |
101 |
ttgaccaaatgatgctgccatttggtttgttcaaaattacaagatttccatttttgtgaattgtgacaattccatttgaatctttgagtggttgatctct |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4145471 |
ttgaccaaatgatgctgccatttggtttgttcaaaattacaagatttccatttttgtgaattgtgacaattccatttgaatctttgagtggttgatctct |
4145570 |
T |
|
| Q |
201 |
gtttgcaatccatatgttgttggtctcattgatgtaccaaattcctaagtaacggttgggcgaatttaatgggctgaaaaatcctagcttgaggtctgtg |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4145571 |
gtttgcaatccatatgttgttggtctcattgatgtaccaaattcctaagtaacggttgggcgaatttaatgggctgaaaaatcctagcttgaggtctgtg |
4145670 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 1 - 300
Target Start/End: Original strand, 4134569 - 4134868
Alignment:
| Q |
1 |
aaactatcccagattgttgctccagaattgatgtctcttagaatcaagttccctgcatcatcaagtttagctgttgaatttgttgaagatgaaatgtttg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4134569 |
aaactatcccagattgttgctccagaattgatgtctcttagaatcaagttccctgcatcatcaagtttagctgttgaatttgttgaagatgaaatgtttg |
4134668 |
T |
|
| Q |
101 |
ttgaccaaatgatgctgccatttggtttgttcaaaattacaagatttccatttttgtgaattgtgacaattccatttgaatctttgagtggttgatctct |
200 |
Q |
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| T |
4134669 |
ttgaccaaatgatgataccatttggtttgttcaatattacaagatttccatctttgtgaattgtgacaattccatttgaatctttgagtggttgatctct |
4134768 |
T |
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| Q |
201 |
gtttgcaatccatatgttgttggtctcattgatgtaccaaattcctaagtaacggttgggcgaatttaatgggctgaaaaatcctagcttgaggtctgtg |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
4134769 |
gtttgcaatccatatgttgttggtctcattgatgtaccaaattcctaagtaacggttgttcgaatttaatgggctgaaaaatcctagcttgaggtctgtg |
4134868 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 1 - 292
Target Start/End: Original strand, 4124024 - 4124315
Alignment:
| Q |
1 |
aaactatcccagattgttgctccagaattgatgtctcttagaatcaagttccctgcatcatcaagtttagctgttgaatttgttgaagatgaaatgtttg |
100 |
Q |
| |
|
||||||||||||||||||||||||||| |||| ||||| | ||||||||| |||| |||| |||||| |||||||||||||||||||||||||||||||| |
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| T |
4124024 |
aaactatcccagattgttgctccagaactgatatctctcaaaatcaagtttcctgaatcagcaagttgagctgttgaatttgttgaagatgaaatgtttg |
4124123 |
T |
|
| Q |
101 |
ttgaccaaatgatgctgccatttggtttgttcaaaattacaagatttccatttttgtgaattgtgacaattccatttgaatctttgagtggttgatctct |
200 |
Q |
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||||||| || || ||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
4124124 |
ttgaccatataataacaccatttggtttgttcaatattacaagatttccatttttgtgaattgtgactattccatttgaatctttgagtggttgatctct |
4124223 |
T |
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| Q |
201 |
gtttgcaatccatatgttgttggtctcattgatgtaccaaattcctaagtaacggttgggcgaatttaatgggctgaaaaatcctagcttga |
292 |
Q |
| |
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||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
4124224 |
gtttgcaatccatatattgttggtctcattgatgtaccaaattcctaggtaacggttggttgaatttaatgggctgaaaaatcctagcttga |
4124315 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 1 - 292
Target Start/End: Original strand, 4153374 - 4153665
Alignment:
| Q |
1 |
aaactatcccagattgttgctccagaattgatgtctcttagaatcaagttccctgcatcatcaagtttagctgttgaatttgttgaagatgaaatgtttg |
100 |
Q |
| |
|
||||||||||||||||||||||| ||| |||| ||||| | ||||||||| |||| |||| |||||| |||||||||||||||||||||||||||||||| |
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| T |
4153374 |
aaactatcccagattgttgctccggaactgatatctctcaaaatcaagtttcctgaatcagcaagttgagctgttgaatttgttgaagatgaaatgtttg |
4153473 |
T |
|
| Q |
101 |
ttgaccaaatgatgctgccatttggtttgttcaaaattacaagatttccatttttgtgaattgtgacaattccatttgaatctttgagtggttgatctct |
200 |
Q |
| |
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||||||| || || ||||||||||||||||| |||| || |||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4153474 |
ttgaccatataataacaccatttggtttgttcaatattataaaatttccatctttgtgaattgtgacaattccatttgaatctttgagtggttgatctct |
4153573 |
T |
|
| Q |
201 |
gtttgcaatccatatgttgttggtctcattgatgtaccaaattcctaagtaacggttgggcgaatttaatgggctgaaaaatcctagcttga |
292 |
Q |
| |
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||||||||||||||| |||||||||| |||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
4153574 |
gtttgcaatccatatattgttggtcttattgatgtaccaaattcctaggtaacggttggttgaatttaatgggctgaaaaatcctagcttga |
4153665 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 1 - 292
Target Start/End: Original strand, 4163727 - 4164024
Alignment:
| Q |
1 |
aaactatcccagattgttgctccagaattgatgtctcttagaatcaagttccctgcatcatcaagtttagctgttgaatttgttgaa----ga--tgaaa |
94 |
Q |
| |
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||||||||||| ||||||| || |||||||||||| |||||||||||||| ||| ||||| |||||| |||||| |||||| ||||| || ||||| |
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| T |
4163727 |
aaactatcccaaattgttgatctagaattgatgtcacttagaatcaagtttcctacatcaacaagttgagctgtggaatttattgaatttggacttgaaa |
4163826 |
T |
|
| Q |
95 |
tgtttgttgaccaaatgatgctgccatttggtttgttcaaaattacaagatttccatttttgtgaattgtgacaattccatttgaatctttgagtggttg |
194 |
Q |
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|| ||||||||||||||||||| |||||| ||||||||| |||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||| |
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| T |
4163827 |
tgcttgttgaccaaatgatgctaccattttctttgttcaatattacaagatttccatttttgtgaattgtgactattccatttgaatccttgagtggttg |
4163926 |
T |
|
| Q |
195 |
atctctgtttgcaatccatatgttgttggtctcattgatgtaccaaattcctaagtaacggttgggcgaatttaatgggctgaaaaatcctagcttga |
292 |
Q |
| |
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||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
4163927 |
atctctgtttgcaatccatatattgttggtctcattgatgtaccaaattcctaggtaacggttggttgaatttaatgggctgaaaaatcctagcttga |
4164024 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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