View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18773_high_2 (Length: 787)
Name: NF18773_high_2
Description: NF18773
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18773_high_2 |
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Alignment Details
Target: chr4 (Bit Score: 745; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 745; E-Value: 0
Query Start/End: Original strand, 1 - 772
Target Start/End: Original strand, 52401406 - 52402182
Alignment:
| Q |
1 |
gggagaaaagggaagaaaatgagggtttaaataatgattttccttccatttgtctgggtattgaaaatcttcaaaaatttgggaaattctgtacgttcat |
100 |
Q |
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| T |
52401406 |
gggagaaaagggaagaaaatgagggtttaaataatgattttccttccatttgtctgggtattgaaaatcttcaaaaatttgggaaattctgtacgttcat |
52401505 |
T |
|
| Q |
101 |
aaaattgaacaaggttgggtttggtagaatcataagaaaatccgtcatttctccccttcatgtataaaatgcctaatcacttttgatattttaaattaag |
200 |
Q |
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| T |
52401506 |
aaaattgaataaggttgggtttggtagaatcataagaaaatccgtcatttctccccttcatgtataaaatgcctaatcacttttgatattttaaattaag |
52401605 |
T |
|
| Q |
201 |
attattaatttaatctcaattttggtttactccctagtcaagt-----atatcactagtatatgatactttaactatgcatagaagtgttaatctcaaat |
295 |
Q |
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| T |
52401606 |
attattaatttaatctcaattttggtttactccctagtcaagtggatgatatcactagtatatgatactttaactatgcatagaagtgttaatctcaaat |
52401705 |
T |
|
| Q |
296 |
catgtaacatatgacagggtccttacagttcacggctcttcagacaccgttatatctgttggagatgcatctaagtttgcccagattttaccaaaccaca |
395 |
Q |
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| T |
52401706 |
catgtaacatatgacagggtccttacagttcacggttcttcagacaccgttatatctgttggagatgcatctaagtttgcccagattttaccaaaccaca |
52401805 |
T |
|
| Q |
396 |
cattacatatcatagaaggagctgatcatccctacactaatcaccaagatgagctagcttcgttagttgttaacttcataaaagaaaccatacaccaaga |
495 |
Q |
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| T |
52401806 |
cattacatatcatagaaggagctgatcatccctacactaatcaccaagatgagctagcttcgttagttgttaacttcataaaagaaaccatacaccaaga |
52401905 |
T |
|
| Q |
496 |
tagggatacttaggtaagtgtctttgttagcagtatatgagcttatttttgtttgagacatccatttttctaatgatatatgtcttgcagttcttagtca |
595 |
Q |
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| T |
52401906 |
tagggatacttaggtaagtgtctttgttagcagtatatgagcttatttttgtttgagacatccatttttctaatgatatatgtcttgcagttcttagtca |
52402005 |
T |
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| Q |
596 |
attgaagttactaccgacaacatattctctcaaagatacggcattgttcaacattttttagctcttctattttttgctcattaaattagtgaatcttgct |
695 |
Q |
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| T |
52402006 |
attgaagttactaccgacaacatattctctcaaagatacggcattgttcaacattttttagctcttctattttttgctcattaaattagtgaatcttgct |
52402105 |
T |
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| Q |
696 |
tttataggcaagaaatcaacggcagaacaatattgtactgtgttatttgcccctgatatgatgtaccgtgttatttt |
772 |
Q |
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| T |
52402106 |
tttataggcaagaattcaacggcagaacaatattgtactgtgttatttgcccctgatatgatgtaccgtgttatttt |
52402182 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 119; E-Value: 2e-60
Query Start/End: Original strand, 382 - 662
Target Start/End: Original strand, 52404001 - 52404293
Alignment:
| Q |
382 |
tttaccaaaccacacattacat-atcatagaaggagctgatcatccctacactaatcaccaagatgagctagcttcgttagttgttaacttcataaaaga |
480 |
Q |
| |
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||||| ||| |||||||||||| ||||| | | |||||||| | ||||||||||||||||| |||||||||||| ||||||||| ||| |||||||| |
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| T |
52404001 |
tttactaaaacacacattacattatcattggaatagctgatcgttcctacactaatcaccaatatgagctagcttagttagttgtcaac---ataaaaga |
52404097 |
T |
|
| Q |
481 |
aaccat--acaccaagatagggatacttaggtaagtgtctttgttagcagtatatgagcttatttttgtttgagacatccatttttctaatgatat---- |
574 |
Q |
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| T |
52404098 |
aaccatgtacaccaatatagggatacttaggtaagtgtctttgttagcattatatgagcttatttttgtttgacacatccatttttctaatgatatcatt |
52404197 |
T |
|
| Q |
575 |
-----atgtcttgcagttcttagtcaattgaagttactac----cgacaacatattctctcaaagatacggcattgttcaacattttttagctcttc |
662 |
Q |
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| T |
52404198 |
gttacatgtcttgtagttccgagtcaattgaagttgctaccgatcgacgacatattttctcacagatatggcattgttcaaca-tttttagctcttc |
52404293 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 384 - 448
Target Start/End: Complemental strand, 17313996 - 17313932
Alignment:
| Q |
384 |
taccaaaccacacattacatatcatagaaggagctgatcatccctacactaatcaccaagatgag |
448 |
Q |
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||||||| |||| ||||||||||| ||||||||||||||| | |||| |||||| ||||||||| |
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| T |
17313996 |
taccaaatcacaagttacatatcattgaaggagctgatcatgcatacaataatcatcaagatgag |
17313932 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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