View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18773_high_8 (Length: 455)
Name: NF18773_high_8
Description: NF18773
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18773_high_8 |
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Alignment Details
Target: chr1 (Bit Score: 386; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 386; E-Value: 0
Query Start/End: Original strand, 12 - 428
Target Start/End: Original strand, 4697919 - 4698333
Alignment:
| Q |
12 |
atcatcattaatttagaaaaagtaattaaacagaagaaaacttattttcagtatacagaagaatgtataaaaactgataagatttatattctttaaaata |
111 |
Q |
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| T |
4697919 |
atcatcgttaatttagaaaaagtaattaaacagaagaaaacttattttcagtatacagaagaatgtataaaaactgataagatttatattctttaaaata |
4698018 |
T |
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| Q |
112 |
aacgtgtgtatgtgtgagtgaaagcatgtaaatataagacatacataaccatcaatttcactgctactatataaatgcctacctaaatgacaagttgtta |
211 |
Q |
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| T |
4698019 |
aacgtgtatatgtgtgagtgaaagcatgtaaata--agacatacataaccatcaatttcactgctactatataaatgcctacctaaatgacaagttgtta |
4698116 |
T |
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| Q |
212 |
gttttgtcattgatcaagctttagcaacatctctggcaatgacctatttttacaattttcaagtttcaattcactgcatctgtcacgaattaacttttta |
311 |
Q |
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| T |
4698117 |
gctttgtcattgatcaagctttagcaacatctctggcaatgacctatttttacaattttcaagtttcaattcactgcatctgtcacgaattaacttttta |
4698216 |
T |
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| Q |
312 |
ttagatctaaatttaggttaagaaagacacactcttttgtgcaaagttaagcataactaccaacattgaaatgactcaactgatttgagttaggctaaga |
411 |
Q |
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| T |
4698217 |
ttagatctaaatttaggttaagaaagacacactcttttgtgcaaagttaagcataactaccaacattgaaatgactcaactgatttgagttaggctaaga |
4698316 |
T |
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| Q |
412 |
acttactagtatttgtc |
428 |
Q |
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| T |
4698317 |
acttattagcatttgtc |
4698333 |
T |
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