View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18773_low_11 (Length: 454)
Name: NF18773_low_11
Description: NF18773
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18773_low_11 |
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Alignment Details
Target: chr3 (Bit Score: 345; Significance: 0; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 71 - 437
Target Start/End: Complemental strand, 50505649 - 50505286
Alignment:
| Q |
71 |
tttaaaagtccgctgttatgcaatggtttcatcatgttttagataatgatttctatattccccatgaagccatgatatgttagtattttgtttagcttgt |
170 |
Q |
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| T |
50505649 |
tttaaaagtccgctgttatgcaatggtttcatcatgttttagataatgatttctatattccccatgaagccatgatatgttagtattttgtttagcttgt |
50505550 |
T |
|
| Q |
171 |
atttttcttatcagataatgcctttgcttattcctattagttatactaaatatttttgcaggatttgaggtgctttgttctcaatcttatttcacttcac |
270 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50505549 |
atttttcttatcagataatgcctttgcttattcctattagttatactaaatatttttgcaggatttgaggtgctttgttctcaatcttatttcacttcac |
50505450 |
T |
|
| Q |
271 |
ttcaagatcaagcctatacctatataagatgttcacaattaaatatgagctcgtcctatttggagtgtgaacattttcaacaactttccctttttgctaa |
370 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
50505449 |
ttcaagatcaagcctatacctatataagatgttcacaattaaatatgagctcgtcctatttggaatgtgaacattttcaacaactttccctttttgctaa |
50505350 |
T |
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| Q |
371 |
agaagttcgacatctgaattagttgatgatgaacggggaaaacctgatttgaatggataacctttgt |
437 |
Q |
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| T |
50505349 |
agaagttcgacatctgaattagttg---atgaacggggaaaacctgatttgaatggttaacctttgt |
50505286 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 6 - 75
Target Start/End: Complemental strand, 50505751 - 50505682
Alignment:
| Q |
6 |
agcagcacagatcaatcactatcatacacgaacctaaaaatcaccgatatagtttatgcaatggttttaa |
75 |
Q |
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| T |
50505751 |
agcaacacacatcaatcactatcatacacgaacctaaaaatcaccgatatagtttatgcaatggttttaa |
50505682 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 225 - 288
Target Start/End: Original strand, 55280797 - 55280860
Alignment:
| Q |
225 |
tttgcaggatttgaggtgctttgttctcaatcttatttcacttcacttcaagatcaagcctata |
288 |
Q |
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|||||||||||||| ||||||||| || |||||||||||||||||||||||||||||||||| |
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| T |
55280797 |
tttgcaggatttgaagtgctttgtcttctctcttatttcacttcacttcaagatcaagcctata |
55280860 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 409 - 437
Target Start/End: Original strand, 55280971 - 55280999
Alignment:
| Q |
409 |
aaaacctgatttgaatggataacctttgt |
437 |
Q |
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| T |
55280971 |
aaaacctgatttgaatggataacctttgt |
55280999 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 196; Significance: 1e-106; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 97 - 394
Target Start/End: Original strand, 28733612 - 28733906
Alignment:
| Q |
97 |
tttcatcatgttttagataatgatttctatattccccatgaagccatgatatgttagtattttgtttagcttgtatttttcttatcagataatgcctttg |
196 |
Q |
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||||||||| |||||||||||||||| |||||||||||||| ||||||||||||||||||||||||| |||| ||||||||||||||||||||| ||||| |
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| T |
28733612 |
tttcatcatattttagataatgatttatatattccccatgaggccatgatatgttagtattttgttttgcttatatttttcttatcagataatgtctttg |
28733711 |
T |
|
| Q |
197 |
cttattcctattagttatactaaatatttttgcaggatttgaggtgctttgttctcaatcttatttcacttcacttcaagatcaagcctatacctatata |
296 |
Q |
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|||| ||||||| ||||| || ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28733712 |
tttatgcctattaattata---aacatttttgcaggatttgaagtgctttgttctcaatcttatttcacttcacttcaagatcaagcctatacctatata |
28733808 |
T |
|
| Q |
297 |
agatgttcacaattaaatatgagctcgtcctatttggagtgtgaacattttcaacaactttccctttttgctaaagaagttcgacatctgaattagtt |
394 |
Q |
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||||||| || |||| |||||| ||||||| | ||| |||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||| |
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| T |
28733809 |
agatgtttactgttaattatgagttcgtcctgctgggaatgtgaacattttcaacaacttttcctttttgctaaagaagtttgacatctgaattagtt |
28733906 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 16 - 73
Target Start/End: Original strand, 28733499 - 28733556
Alignment:
| Q |
16 |
atcaatcactatcatacacgaacctaaaaatcaccgatatagtttatgcaatggtttt |
73 |
Q |
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||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||| |
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| T |
28733499 |
atcaatcactatcatgcacgaacctaaaaatcaccaatatagtttatgcaatggtttt |
28733556 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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