View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18773_low_17 (Length: 244)
Name: NF18773_low_17
Description: NF18773
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18773_low_17 |
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| [»] chr1 (1 HSPs) |
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| [»] scaffold0001 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 222; Significance: 1e-122; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 15 - 244
Target Start/End: Complemental strand, 2308247 - 2308018
Alignment:
| Q |
15 |
aatatcttccacatgtattacctcattaaggaaaatcgaatggttcctcgcttgccaaatagcccatatagttgcaagccaaatgatccacaaaccttta |
114 |
Q |
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| T |
2308247 |
aatatcttccacatgtattacctcattaaggaaaatcgaatggttcctcgcttgccaaatagcccatatagttgcatgccaaatgatccacaaaccttta |
2308148 |
T |
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| Q |
115 |
cgaatcctcttgtttctcccttcattactccaacatgcccaatgcacaaacaaattcggcatcatagtgcaggaaatgatctacctcaattgatcaacaa |
214 |
Q |
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| T |
2308147 |
cgaatcctcttgtttctcccttcattactccaacatgcccaatgcacaaacaaattcggcatcatagtgcaggaaatgatctacctcaattgatcaacaa |
2308048 |
T |
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| Q |
215 |
aattgcacaatggcatcatagtaactgtgc |
244 |
Q |
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| T |
2308047 |
aattgcacaatggcatcatagtgactgtgc |
2308018 |
T |
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Target: chr3 (Bit Score: 80; Significance: 1e-37; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 58 - 173
Target Start/End: Original strand, 9359437 - 9359552
Alignment:
| Q |
58 |
ttcctcgcttgccaaatagcccatatagttgcaagccaaatgatccacaaacctttacgaatcctcttgtttctcccttcattactccaacatgcccaat |
157 |
Q |
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| T |
9359437 |
ttcctagcttgccaaatagcccaaatagttgcatgccaaataatccacaaccccttgcgaatcttcttgtttctcccttcaatactccaacatgcccaat |
9359536 |
T |
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| Q |
158 |
gcacaaacaaattcgg |
173 |
Q |
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| T |
9359537 |
gcacaaacaaattcgg |
9359552 |
T |
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Target: chr8 (Bit Score: 60; Significance: 1e-25; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 22 - 113
Target Start/End: Original strand, 32915310 - 32915401
Alignment:
| Q |
22 |
tccacatgtattacctcattaaggaaaatcgaatggttcctcgcttgccaaatagcccatatagttgcaagccaaatgatccacaaaccttt |
113 |
Q |
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| T |
32915310 |
tccacatgtttcacctcattacgaaaaatcaaatgattcctcgcttgccaaatagcccaaatagttgcatgccaaatgatccacaaaccttt |
32915401 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 34 - 146
Target Start/End: Complemental strand, 24945440 - 24945328
Alignment:
| Q |
34 |
acctcattaaggaaaatcgaatggttcctcgcttgccaaatagcccatatagttgcaagccaaatgatccacaaacctttacgaatcctcttgtttctcc |
133 |
Q |
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| T |
24945440 |
acctcattccggaaaatacaatgatttctagcttgccaaattgaccaaatagttgcatgccaaataatccacaaccccttacggatcctcttatttctac |
24945341 |
T |
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| Q |
134 |
cttcattactcca |
146 |
Q |
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| T |
24945340 |
cttcaatactcca |
24945328 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 59; Significance: 4e-25; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 61 - 167
Target Start/End: Original strand, 41195215 - 41195321
Alignment:
| Q |
61 |
ctcgcttgccaaatagcccatatagttgcaagccaaatgatccacaaacctttacgaatcctcttgtttctcccttcattactccaacatgcccaatgca |
160 |
Q |
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| T |
41195215 |
ctcgcttgccaaataacccaaatagtagcatgccaaataatccacaatcccttacgaattctcttatttctagcttcattactccaacaagcccaatgca |
41195314 |
T |
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| Q |
161 |
caaacaa |
167 |
Q |
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| T |
41195315 |
caaacaa |
41195321 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 93 - 170
Target Start/End: Complemental strand, 18233367 - 18233291
Alignment:
| Q |
93 |
ccaaatgatccacaaacctttacgaatcctcttgtttctcccttcattactccaacatgcccaatgcacaaacaaatt |
170 |
Q |
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| T |
18233367 |
ccaaatcatccacaacccctttcgaatcctcttaattctcccctcattactccaacatgccc-atgcacaaacaaatt |
18233291 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 84 - 173
Target Start/End: Complemental strand, 43805434 - 43805345
Alignment:
| Q |
84 |
agttgcaagccaaatgatccacaaacctttacgaatcctcttgtttctcccttcattactccaacatgcccaatgcacaaacaaattcgg |
173 |
Q |
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| T |
43805434 |
agttgcatgccaaataatccataaacctttacagatcctcttatttctcccttcactactccaacaaacccaatgcacagacaaattcgg |
43805345 |
T |
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Target: chr4 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 82 - 150
Target Start/End: Complemental strand, 51091139 - 51091071
Alignment:
| Q |
82 |
atagttgcaagccaaatgatccacaaacctttacgaatcctcttgtttctcccttcattactccaacat |
150 |
Q |
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| T |
51091139 |
atagttgcatgccaaatcatccataaacctctatggatcctcttgattctaccttccttactccaacat |
51091071 |
T |
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Target: scaffold0001 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0001
Description:
Target: scaffold0001; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 61 - 173
Target Start/End: Original strand, 520173 - 520285
Alignment:
| Q |
61 |
ctcgcttgccaaatagcccatatagttgcaagccaaatgatccacaaacctttacgaatcctcttgtttctcccttcattactccaacatgcccaatgca |
160 |
Q |
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| T |
520173 |
ctcgcttgccaaattgaccaaatagttgcatcccaaataatccccaaccccttccgaaccttcttatttcctccaacattactccaactcgtccaatgaa |
520272 |
T |
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| Q |
161 |
caaacaaattcgg |
173 |
Q |
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| T |
520273 |
caaacaaattcgg |
520285 |
T |
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