View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18773_low_18 (Length: 239)
Name: NF18773_low_18
Description: NF18773
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18773_low_18 |
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Alignment Details
Target: chr2 (Bit Score: 200; Significance: 1e-109; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 16759344 - 16759124
Alignment:
| Q |
1 |
ttaaaatacaaatgtgcatttcaaatttgtgcattgtaannnnnnnggtcgaatttcgtaccagatgttaattatgtgacatatcaacataattttttat |
100 |
Q |
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| T |
16759344 |
ttaaaatacaaatgtgcatttcaaatttgtgcattgtaatttttttggtcgaatttcgtaccagatgttaattatgtgacatatcaacataattttttat |
16759245 |
T |
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| Q |
101 |
actttaaattttttgcagggtttctcttggattggcaattgcgtttcctgtagcaatactatactatgttctacttgagcttaacaaatctttttaacaa |
200 |
Q |
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| T |
16759244 |
actttaaattttttgcagggtttctcttggattggcaattgcgtttcctgtagcaatactatactatgttctacttgagcttaacaaatctttttaacaa |
16759145 |
T |
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| Q |
201 |
gtgaaagagaaatgaagtttg |
221 |
Q |
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||||||||||||||||||||| |
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| T |
16759144 |
gtgaaagagaaatgaagtttg |
16759124 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 160 - 221
Target Start/End: Complemental strand, 16753939 - 16753880
Alignment:
| Q |
160 |
tatactatgttctacttgagcttaacaaatctttttaacaagtgaaagagaaatgaagtttg |
221 |
Q |
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||||||||| ||| |||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
16753939 |
tatactatgatcttcttgagcttaacaaatctttttaacaagtg--agagaaatgaagtttg |
16753880 |
T |
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