View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18773_low_21 (Length: 205)
Name: NF18773_low_21
Description: NF18773
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18773_low_21 |
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Alignment Details
Target: chr3 (Bit Score: 177; Significance: 1e-95; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 177; E-Value: 1e-95
Query Start/End: Original strand, 17 - 197
Target Start/End: Original strand, 9494263 - 9494443
Alignment:
| Q |
17 |
acaacaaaccctaattcgtcatcgtccttggttggtaagaattcgccaatactcaaatggcaaaacccaaatcttaaactcactcatctcatatcaatca |
116 |
Q |
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| T |
9494263 |
acaacaaaccctaattcgtcatcgtccttggttggtaagaattcgccaatactcaaatggcaaaacccaaatcttaaacccactcatctcatatcaatca |
9494362 |
T |
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| Q |
117 |
ccttttgattcacttcactccatcgacttcaacaaactctctgtcatccatttaggaaccgatttcattgttcatgatgat |
197 |
Q |
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| T |
9494363 |
ccttttgattcacttcactccatcgacttcaacaaactctctgtcatccatttaggaaccgatttcattgttcatgatgat |
9494443 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 17 - 94
Target Start/End: Complemental strand, 9353592 - 9353515
Alignment:
| Q |
17 |
acaacaaaccctaattcgtcatcgtccttggttggtaagaattcgccaatactcaaatggcaaaacccaaatcttaaa |
94 |
Q |
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| T |
9353592 |
acaagaaaccctaattcgtcgtcggccttggttgatacgaattacccaaaactcaagtggtaaaactcaactcttaaa |
9353515 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 139 - 167
Target Start/End: Complemental strand, 9395789 - 9395761
Alignment:
| Q |
139 |
tcgacttcaacaaactctctgtcatccat |
167 |
Q |
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| T |
9395789 |
tcgacttcaacaaactctctgtcatccat |
9395761 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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