View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18773_low_3 (Length: 764)
Name: NF18773_low_3
Description: NF18773
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18773_low_3 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 722; Significance: 0; HSPs: 11)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 722; E-Value: 0
Query Start/End: Original strand, 1 - 746
Target Start/End: Complemental strand, 37077331 - 37076586
Alignment:
| Q |
1 |
aataaaaaccacctcataatactatatataacggaggaaaagaaaatacacaatcctgtcataaaaacataagaaaaaactccatgccaagtatccttga |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
37077331 |
aataaaaaccacctcataatactatatataacggaggaaaagaaaatacacaatcctgtcataaaaacataagaaaaaactccatgtcaagtatccttga |
37077232 |
T |
|
| Q |
101 |
gttggttgatttatttctaaaatatcacattattgcgacacaatggacacaagagggatgattgatgactggaaaatcttttgagccattggaaaataca |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37077231 |
gttggttgatttatttctaaaatatcacattattgcgacacaatggacacaagagggatgattgatgactggaaaatcttttgagccattggaaaataca |
37077132 |
T |
|
| Q |
201 |
ctcttcatgaaaaacatgcaaacatttggtcataacacattcagactctggtctattgaagagctcttccaaacaaattgaacattgatctctagagtaa |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37077131 |
ctcttcatgaaaaacatgcaaacatttggtcataacacattcagactctggtccattgaagagctcttccaaacaaattgaacattgatctctagagtaa |
37077032 |
T |
|
| Q |
301 |
caagatgagtgatccattccaacctttttcaaatcatccaaaacaagtacggctttcacagcatcatcatcttcaatataccataagcgtcacaactatt |
400 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37077031 |
caagatgagtgatccattccaacctttttcaaatcatccaaaacaagtacggctttcacagcatcatcatcttcaatataccataagcgtcacaactatc |
37076932 |
T |
|
| Q |
401 |
ttccaccaattatgaccttcatcgttatttgcgaccatctccttagcatgttttccaatatcgggcaggatttgttttaatgtgtcaggataaatagtca |
500 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
37076931 |
ttccaccaattatgaccttcatcgttatttgcgactatctccttagcatgttttccaatatcgggcaggatttgttttaatatgtcaggataaatagtca |
37076832 |
T |
|
| Q |
501 |
tatataagatgtaggcatccttatctaatgaaatttcatcgcaattacataagatgtcacaaggaatcaatgggatttgcttcatggtggtcctacaaga |
600 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37076831 |
tatataagatgttggcatccttatctaatgaaatttcatcgcaattacataagatgtcacaaggaatcaatgggatttgcttcatggtggtcctacaaga |
37076732 |
T |
|
| Q |
601 |
cgatactgagtttgaggcattgagatgcaagggaaaactaacttgaatgtaatagaacttaatgtaaaagtagttgctaaaaggatcatcttttgggatt |
700 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37076731 |
cgatactgagtttgaggcattgagatgcaagggaaaactaacttgaatgtaatagaacttaatgtaaaagtagttgctaaaaggatcatcttttgggatt |
37076632 |
T |
|
| Q |
701 |
gtaatggttggtttttcgattgaagttatattcattacaaagttac |
746 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37076631 |
gtaatggttggtttttcgattgaagttatattcattacaaagttac |
37076586 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 132 - 384
Target Start/End: Complemental strand, 37073441 - 37073189
Alignment:
| Q |
132 |
attgcgacacaatggacacaagagggatgattgatgactggaaaatcttttgagccattggaaaatacactcttcatgaaaaacatgcaaacatttggtc |
231 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||| | ||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
37073441 |
attgcgacacaatggacataagagggatgattgatgactggagcaacttttgagccattggaaaatacattcttcatgaaaaacatgcaaacatttggtc |
37073342 |
T |
|
| Q |
232 |
ataacacattcagactctggtctattgaagagctcttccaaacaaattgaacattgatctctagagtaacaagatgagtgatccattccaacctttttca |
331 |
Q |
| |
|
||||||||||| |||| || || |||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
37073341 |
ataacacattctgactttgatccattgaagagctcttccaaacaaattgaacattgatccatagagtaacaagatgactgatccattccaacctttttca |
37073242 |
T |
|
| Q |
332 |
aatcatccaaaacaagtacggctttcacagcatcatcatcttcaatataccat |
384 |
Q |
| |
|
||||||||| | ||||||| |||||||||||||| |||||||||||||||||| |
|
|
| T |
37073241 |
aatcatccacagcaagtacagctttcacagcatcttcatcttcaatataccat |
37073189 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 183; E-Value: 1e-98
Query Start/End: Original strand, 113 - 718
Target Start/End: Original strand, 37493287 - 37493936
Alignment:
| Q |
113 |
atttctaaaatatcacattattgcgacacaatggacacaagagggatgattgatgactggaaaatcttttgagccattggaaaatacactcttcatgaaa |
212 |
Q |
| |
|
|||| |||||||||||| |||||||| |||||||||||| || |||||||||||||||| | | ||||||| ||||||||||||||| |||| |||||| |
|
|
| T |
37493287 |
atttttaaaatatcacaatattgcgagacaatggacacatgacggatgattgatgactgaagcaacttttgaaccattggaaaatacagtctttatgaaa |
37493386 |
T |
|
| Q |
213 |
aacatgcaaacatttggtcataacacattcagactctggtctattgaagagctcttccaaac--------aaattgaacattgatctctagagtaacaag |
304 |
Q |
| |
|
||||||||||||||| ||||||||||||| |||| || || |||||||||||||||||||| |||||||||||||| | |||||||||||| |
|
|
| T |
37493387 |
aacatgcaaacattttgtcataacacattgtgactttgatccattgaagagctcttccaaacaaattgaaaaattgaacattgagttgtagagtaacaag |
37493486 |
T |
|
| Q |
305 |
atgagtgatccattccaacctttttcaaatcatc---caaaacaagtacggctttcacagcatcatcatcttcaatataccat-----------aagcgt |
390 |
Q |
| |
|
|||||| ||||||||||| ||| |||| || | | || ||||||| | | || |||||| ||| |||||||||||||| |||||| |
|
|
| T |
37493487 |
atgagttatccattccaatgtttgtcaacccacctattataagaagtacgacgtccagagcatcttcagcttcaatataccatgtatagacagaaagcgt |
37493586 |
T |
|
| Q |
391 |
cacaactattttccaccaattatgaccttcatcgttatttgcgaccatctccttagcatgttttccaatatc-gggcaggatttgttttaatgtgtcagg |
489 |
Q |
| |
|
|||| |||| | ||||| |||||||||||||| ||| |||||||||||||||||||||| |||||||||||| | ||| |||||||||||| ||||||| |
|
|
| T |
37493587 |
cacatctatctcccacctattatgaccttcattgttgtttgcgaccatctccttagcatattttccaatatcttgacagaatttgttttaatatgtcagg |
37493686 |
T |
|
| Q |
490 |
ataaatagtcat---------------atataaga---tgtaggcatccttatctaa---tgaaatttcatcgcaattacataagatgtcacaaggaatc |
568 |
Q |
| |
|
| |||||| ||| |||||||| ||| ||||||||||||||| || ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37493687 |
agaaataggcatggaggaaaaagtgtaatataagaaagtgttggcatccttatctaacggtgtaatttcatcgcaattacataagatgtcacaaggaatc |
37493786 |
T |
|
| Q |
569 |
aatgggatttgcttcatggtggtcctacaagacgatactgagtttgaggcattgagatgcaagggaaaactaacttgaatgtaatagaacttaatgtaaa |
668 |
Q |
| |
|
|| ||||||| | ||| || ||| |||||| ||||| |||| |||| |||||||||||||||||||| ||| ||| ||||||| ||| |||||||||| |
|
|
| T |
37493787 |
aacaggatttgatacatcgtagtcttacaagtcgataatgagattgatgcattgagatgcaagggaaagttaaattggatgtaatggaaattaatgtaaa |
37493886 |
T |
|
| Q |
669 |
agtagttgctaaaaggatcatcttttgggattgtaatggttggtttttcg |
718 |
Q |
| |
|
||| || |||||||||||||||||||||||||||| ||||||| |||| |
|
|
| T |
37493887 |
agtgattactaaaaggatcatcttttgggattgtaaatgttggttcttcg |
37493936 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 149; E-Value: 3e-78
Query Start/End: Original strand, 176 - 384
Target Start/End: Original strand, 36904372 - 36904580
Alignment:
| Q |
176 |
atcttttgagccattggaaaatacactcttcatgaaaaacatgcaaacatttggtcataacacattcagactctggtctattgaagagctcttccaaaca |
275 |
Q |
| |
|
||||||||| |||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||| || || |||||||||||||||||||| |
|
|
| T |
36904372 |
atcttttgaaccattggaaaatacactctttatgaaaaacatgcaaacattcagtcataacacattcagactttgatcctttgaagagctcttccaaaca |
36904471 |
T |
|
| Q |
276 |
aattgaacattgatctctagagtaacaagatgagtgatccattccaacctttttcaaatcatccaaaacaagtacggctttcacagcatcatcatcttca |
375 |
Q |
| |
|
||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||| | ||||||| |||||||||||||| ||||||||| |
|
|
| T |
36904472 |
aattgaacattgatccatagagtaacaagatgactgatccattccaacctttttcaaatcatccatagcaagtacagctttcacagcatcttcatcttca |
36904571 |
T |
|
| Q |
376 |
atataccat |
384 |
Q |
| |
|
||||||||| |
|
|
| T |
36904572 |
atataccat |
36904580 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 98; E-Value: 7e-48
Query Start/End: Original strand, 536 - 729
Target Start/End: Complemental strand, 37073041 - 37072848
Alignment:
| Q |
536 |
tcatcgcaattacataagatgtcacaaggaatcaatgggatttgcttcatggtggtcctacaagacgatactgagtttgaggcattgagatgcaagggaa |
635 |
Q |
| |
|
||||| |||||||||||||||| ||||||||| || |||| | ||||||||||| ||||||| || | ||||||||||||||||||||||||||||| |
|
|
| T |
37073041 |
tcatcacaattacataagatgttacaaggaataaaaaagattcgattcatggtggtactacaagcagaaaatgagtttgaggcattgagatgcaagggaa |
37072942 |
T |
|
| Q |
636 |
aactaacttgaatgtaatagaacttaatgtaaaagtagttgctaaaaggatcatcttttgggattgtaatggttggtttttcgattgaagttat |
729 |
Q |
| |
|
|| ||||||| ||||||| ||| ||||||||||||| || ||||||||||||||||||| |||||||| |||||||| |||||||||| |||| |
|
|
| T |
37072941 |
aattaacttggatgtaatggaaattaatgtaaaagtctttactaaaaggatcatcttttgagattgtaaaggttggttcttcgattgaacttat |
37072848 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 95; E-Value: 4e-46
Query Start/End: Original strand, 536 - 722
Target Start/End: Original strand, 36904734 - 36904920
Alignment:
| Q |
536 |
tcatcgcaattacataagatgtcacaaggaatcaatgggatttgcttcatggtggtcctacaagacgatactgagtttgaggcattgagatgcaagggaa |
635 |
Q |
| |
|
||||| |||||||||||||||||||||||||| | |||| | ||||||||||||||||||| || | |||||||||||||||||||||||| |||| |
|
|
| T |
36904734 |
tcatcacaattacataagatgtcacaaggaatagaaaagattcgattcatggtggtcctacaagcagaaaatgagtttgaggcattgagatgcaaaggaa |
36904833 |
T |
|
| Q |
636 |
aactaacttgaatgtaatagaacttaatgtaaaagtagttgctaaaaggatcatcttttgggattgtaatggttggtttttcgattg |
722 |
Q |
| |
|
|| ||||||| ||||||| ||| ||||||||||||| || |||||||||||||||||||||||||||| |||||| | |||||||| |
|
|
| T |
36904834 |
aattaacttggatgtaatggaaattaatgtaaaagtctttcctaaaaggatcatcttttgggattgtaaaggttggatcttcgattg |
36904920 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 419 - 497
Target Start/End: Original strand, 36904617 - 36904695
Alignment:
| Q |
419 |
tcatcgttatttgcgaccatctccttagcatgttttccaatatcgggcaggatttgttttaatgtgtcaggataaatag |
497 |
Q |
| |
|
||||||||| |||||| |||||||||||||| ||||||||| || ||||||||||||||||| ||| |||| |||||| |
|
|
| T |
36904617 |
tcatcgttacttgcgatcatctccttagcatattttccaatctcaagcaggatttgttttaatatgtgaggagaaatag |
36904695 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 532 - 572
Target Start/End: Complemental strand, 36747001 - 36746961
Alignment:
| Q |
532 |
aatttcatcgcaattacataagatgtcacaaggaatcaatg |
572 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36747001 |
aatttcatcgcaattacataagatgtcacaaggaatcaatg |
36746961 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 4 - 150
Target Start/End: Original strand, 36904214 - 36904364
Alignment:
| Q |
4 |
aaaaaccacctcataatactatatataacggaggaaaagaaaatacacaatcctgtcataaaaacataagaaaaaactccatgccaag---tatccttga |
100 |
Q |
| |
|
||||| ||| |||||||||| |||| || | |||||||||||||||||||||| |||| | ||||||| |||| ||||| ||| || | |||||| |
|
|
| T |
36904214 |
aaaaaacacatcataatactgtatacaaggtaggaaaagaaaatacacaatccagtcacaggaacataaaaaaatactccgtgcataggtacacccttga |
36904313 |
T |
|
| Q |
101 |
gttggttga-tttatttctaaaatatcacattattgcgacacaatggacac |
150 |
Q |
| |
|
||||||||| ||| ||| ||||||||| || ||||||||||||||||||| |
|
|
| T |
36904314 |
gttggttgattttttttttaaaatatcttatcattgcgacacaatggacac |
36904364 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #10
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 425 - 497
Target Start/End: Complemental strand, 37073152 - 37073080
Alignment:
| Q |
425 |
ttatttgcgaccatctccttagcatgttttccaatatcgggcaggatttgttttaatgtgtcaggataaatag |
497 |
Q |
| |
|
||||||||||||||||| ||||||| ||||||||| || ||||||||||||||||| ||| |||| |||||| |
|
|
| T |
37073152 |
ttatttgcgaccatctctttagcatattttccaatctcaagcaggatttgttttaatatgtgaggagaaatag |
37073080 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #11
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 3 - 56
Target Start/End: Original strand, 37493215 - 37493268
Alignment:
| Q |
3 |
taaaaaccacctcataatactatatataacggaggaaaagaaaatacacaatcc |
56 |
Q |
| |
|
||||||| |||| |||||||||| ||||| | |||||||||||||||||||||| |
|
|
| T |
37493215 |
taaaaacaaccttataatactatgtataatgaaggaaaagaaaatacacaatcc |
37493268 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 127; Significance: 4e-65; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 127; E-Value: 4e-65
Query Start/End: Original strand, 102 - 384
Target Start/End: Original strand, 41371338 - 41371620
Alignment:
| Q |
102 |
ttggttgatttatttctaaaatatcacattattgcgacacaatggacacaagagggatgattgatgactggaaaatcttttgagccattggaaaatacac |
201 |
Q |
| |
|
||||||||||| ||| | |||||| |||||||||||||||||||||| |||| ||||||||| |||| |||||||||||||||| ||||| ||| |
|
|
| T |
41371338 |
ttggttgatttgttttcataatatctgattattgcgacacaatggacacgagagtgatgattgacgacttatgcatcttttgagccattgaaaaatgcac |
41371437 |
T |
|
| Q |
202 |
tcttcatgaaaaacatgcaaacatttggtcataacacattcagactctggtctattgaagagctcttccaaacaaattgaacattgatctctagagtaac |
301 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||| ||| |||| || || |||||||| |||||||||||| |||| ||||||||| || |||||| |
|
|
| T |
41371438 |
tctttatgaaaaacatgcaaacatttggtcataacatgttctgactttgatccattgaagaactcttccaaacatattgtacattgatcattatagtaac |
41371537 |
T |
|
| Q |
302 |
aagatgagtgatccattccaacctttttcaaatcatccaaaacaagtacggctttcacagcatcatcatcttcaatataccat |
384 |
Q |
| |
|
||||||| | ||||||||||||||||||||| ||||| |||||||| |||||||||| |||||| |||||||| ||||||| |
|
|
| T |
41371538 |
aagatgaatcatccattccaacctttttcaacctatccacaacaagtatggctttcacaacatcattatcttcaacataccat |
41371620 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 607 - 695
Target Start/End: Original strand, 41371878 - 41371966
Alignment:
| Q |
607 |
tgagtttgaggcattgagatgcaagggaaaactaacttgaatgtaatagaacttaatgtaaaagtagttgctaaaaggatcatcttttg |
695 |
Q |
| |
|
|||||||||||||||| ||| || |||||| ||||||| |||||| ||| ||||||||||||||||| |||||||||||||||||| |
|
|
| T |
41371878 |
tgagtttgaggcattggtatgtaaaggaaaattaacttggttgtaatggaaattaatgtaaaagtagttattaaaaggatcatcttttg |
41371966 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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