View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18773_low_4 (Length: 759)
Name: NF18773_low_4
Description: NF18773
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18773_low_4 |
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Alignment Details
Target: chr7 (Bit Score: 690; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 690; E-Value: 0
Query Start/End: Original strand, 13 - 743
Target Start/End: Original strand, 33401032 - 33401762
Alignment:
| Q |
13 |
aatataaacaacgtcaacaaaaaatatcttcacccataaaagcaatgacagaaaaaccataatgtataaagatgatgaagaatgtatagtttttcctcac |
112 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33401032 |
aatataaacaacgtcaacaaaaaatatcttcacccataaaagcaatgacagaaaaaccataatgtataaagatgatgaagaatgtatagtttttcctcac |
33401131 |
T |
|
| Q |
113 |
cttggcttcatcaaatacataagtaggaaaactagagagtacaccaaggaaagtccaccaatgagaatatatgcaatccccaagaaatcattttttccac |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33401132 |
cttggcttcatcaaatacataagtaggaaaactagagagtacaccaaggaaagtccaccaatgagaatatatgcaatccccaagaaatcattttttccac |
33401231 |
T |
|
| Q |
213 |
caatccatgttgtggttgatagaatcacactctttgttcctccaaattgatatgtattataattgttctctattactacagttatttcatcgttagcttc |
312 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
33401232 |
caatccatgttgtggttgatagaatcacactctttgttcctccaaattgatatgtattataattgttctctattactaccgttatttcatcgttagcttc |
33401331 |
T |
|
| Q |
313 |
aaggtcgacttcaatcttcccgtataattttctgaatgtaggcagtgctgctgttctcatccatacaatcagatcctcttgttcactcaactgtttcatt |
412 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33401332 |
aaggtcgacttcaatcttcccgtataattttctgaatgtaggcagtgctgctgttctcatccatacaatcagatcctcttgttcactcaactgtttcatt |
33401431 |
T |
|
| Q |
413 |
ccacatcaacacaaacaagattaattttctcaaaatgtcgacaagaaaattatatttaacacgnnnnnnnttatatagtgacgaagatatataaatattt |
512 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||| |
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|
| T |
33401432 |
ccacatcaacacaaacaagattaattttctcaaaatgtcgacaagaaaattatatttaacacgaaaaaaattatatagtgacaaagatatataaatattt |
33401531 |
T |
|
| Q |
513 |
acttacaggtatgctctcattaagtctagcacccccaattaaaccgccagtctgaaaatttttaggataaacatcagacccaaatttggccttttggtca |
612 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
33401532 |
acttacaggtatgctctcattaagtctagcacccccaattaaactgccagtctgaaaatttttaggataaacatcagacccaaatttggccttttggtca |
33401631 |
T |
|
| Q |
613 |
cttttccatgctatattctttttgttaatcaccaagtccttattattgtttgaaaatctgtatgtgtcattgaatagactccatgcagcaaggccgcaag |
712 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||| |
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| T |
33401632 |
cttttccatgctatattctttttgttaatcaccaagtccttattattgtttgaaaatctgtatgtgtcattgaatagactccaagcagcaaggccacaag |
33401731 |
T |
|
| Q |
713 |
gaacaaccggaagataaccatttgcagtata |
743 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
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|
| T |
33401732 |
gaacaaccggaagataaccatttgcagtata |
33401762 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 51; Significance: 8e-20; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 299 - 405
Target Start/End: Complemental strand, 43601010 - 43600904
Alignment:
| Q |
299 |
tcatcgttagcttcaaggtcgacttcaatcttcccgtataattttctgaatgtaggcagtgctgctgttctcatccatacaatcagatcctcttgttcac |
398 |
Q |
| |
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||||||||| ||||||| ||| || |||||||| || | ||||||||| || || | |||||||||||||||||| |||||||||||||||||||||| |
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| T |
43601010 |
tcatcgttaacttcaagatcggactctatcttcccatacagttttctgaacgttggtaatgctgctgttctcatccaaacaatcagatcctcttgttcac |
43600911 |
T |
|
| Q |
399 |
tcaactg |
405 |
Q |
| |
|
||||||| |
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|
| T |
43600910 |
tcaactg |
43600904 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 513 - 718
Target Start/End: Complemental strand, 43599615 - 43599410
Alignment:
| Q |
513 |
acttacaggtatgctctcattaagtctagcacccccaattaaaccgccagtctgaaaatttttaggataaacatcagacccaaatttggccttttggtca |
612 |
Q |
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||||||||||| ||| ||||| ||| | ||||| ||||| ||||| ||| |||||||||||||||||||||| ||| |||||||| | |||| |||| |
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| T |
43599615 |
acttacaggtacgctttcattgagttttgcacctccaatcaaacctccactctgaaaatttttaggataaacttcatgaccaaatttagaatttttgtca |
43599516 |
T |
|
| Q |
613 |
cttttccatgctatattctttttgttaatcaccaagtccttattattgtttgaaaatctgtatgtgtcattgaatagactccatgcagcaaggccgcaag |
712 |
Q |
| |
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||| ||||||||| ||||||||||| || || ||||| || | |||||||| |||| ||||||||||| | |||||||||| ||||| |||| |
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| T |
43599515 |
cttccccatgctatgttctttttgttgatagttaaatccttgttgtcaattgaaaatttgtaggtgtcattgaacatactccatgcaatgaggccacaag |
43599416 |
T |
|
| Q |
713 |
gaacaa |
718 |
Q |
| |
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|||||| |
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|
| T |
43599415 |
gaacaa |
43599410 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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