View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18773_low_5 (Length: 730)
Name: NF18773_low_5
Description: NF18773
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18773_low_5 |
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Alignment Details
Target: chr7 (Bit Score: 606; Significance: 0; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 606; E-Value: 0
Query Start/End: Original strand, 19 - 720
Target Start/End: Original strand, 30116520 - 30117222
Alignment:
| Q |
19 |
gcattggttaatgaagcaaggaaagatgacattctagctattgcaaatcttgcaatgagatgtttgagacttaatggtaagaaaagaccaacaatgaaag |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30116520 |
gcattggttaatgaagcaaggaaagatgacattctagctattgcaaatcttgcaatgagatgtttgagacttaatggtaagaaaagaccaacaatgaaag |
30116619 |
T |
|
| Q |
119 |
aggtttcaatggaattagaagcactaagaaaggtacagagttccttacaagtcaaagatgatcaagaatcaccaagtgatgaacaatcacttaggcatac |
218 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30116620 |
aggtttcaatggaattagaagcactaagaaaggtacagagttccttacatatcaaagatgatcaagaatcaccaagtgatgaacaatcacttaggcatac |
30116719 |
T |
|
| Q |
219 |
aactaatgatacattccatgagtctacagcggaaagcttttcgctatcctcgcaaatggagtccacatacttctaaaacgccagattgatacatattatt |
318 |
Q |
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||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
30116720 |
aactaatgatacatttcatgagtctacagtggaaagcttttcgctatcctcgcaaatggagtccacatacttctaaaatgccagattgatacatattatt |
30116819 |
T |
|
| Q |
319 |
gatttattctgctttgttctacattttcaacttatggactaaggtgtatcctggagatggctgaggatacacatgacaannnnnnnaattccttaatcaa |
418 |
Q |
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|||||||| |||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
30116820 |
gatttattatgctttcttctacattttcaacttatggactaaggtatatcctggagatggctgaggatacacatgacaatttttttaattccttaatcaa |
30116919 |
T |
|
| Q |
419 |
caatcaacaacatctgaactctgaaaagataccaaactttgttctaataaaataatcgttgtccctatctgttgttcatattcaggaaatatctaccaac |
518 |
Q |
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||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30116920 |
caatcaacaacatctgaactctgaagagataccaaacttcgttctaataaaataatcgttgtccctatctgttgttcatattcaggaaatatctaccaac |
30117019 |
T |
|
| Q |
519 |
acaacaccctctacactgtc-aaaaaaggtgattcttattatcacttggtaaatggtacttaccaaagaaagcctcatgacatgtcaggctacgaagggt |
617 |
Q |
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| ||||||| |||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||| |
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| T |
30117020 |
ataacaccccctacactgtcaaaaaaaggtgattcctattatcacttggtaaatggtacttaccaaagaaagcctcacgccatgtcaggctacgaagggt |
30117119 |
T |
|
| Q |
618 |
cagagttactatacttctgtgaaaacatttcaattgatgttgagctcacatttgatcaaggagacaggtcaagctgaggttggttccctccacttttctt |
717 |
Q |
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|||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30117120 |
cagaattactatgcttctgtgaaaacatttcaattgatgttgagctcacatttgatcaaggagacaggtcaagctgaggttggttccctccacttttctt |
30117219 |
T |
|
| Q |
718 |
cat |
720 |
Q |
| |
|
||| |
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|
| T |
30117220 |
cat |
30117222 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 83; E-Value: 6e-39
Query Start/End: Original strand, 554 - 720
Target Start/End: Original strand, 30126642 - 30126808
Alignment:
| Q |
554 |
tattatcacttggtaaatggtacttaccaaagaaagcctcatgacatgtcaggctacgaagggtcagagttactatacttctgtgaaaacatttcaattg |
653 |
Q |
| |
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||||||||||| ||||| ||||||||||||||||||||| |||||||||||| ||||||||| || | ||||| ||| |||||||||||| |||| | |
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| T |
30126642 |
tattatcacttattaaataatacttaccaaagaaagcctcacaacatgtcaggcttcgaagggtcggattaactatgcttttgtgaaaacattgcaatcg |
30126741 |
T |
|
| Q |
654 |
atgttgagctcacatttgatcaaggagacaggtcaagctgaggttggttccctccacttttcttcat |
720 |
Q |
| |
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|||| || |||| |||||||||| || || |||||| |||||||||||||||||||||||||||||| |
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| T |
30126742 |
atgtcgaactcaaatttgatcaacgaaactggtcaaactgaggttggttccctccacttttcttcat |
30126808 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 31 - 161
Target Start/End: Original strand, 30106441 - 30106571
Alignment:
| Q |
31 |
gaagcaaggaaagatgacattctagctattgcaaatcttgcaatgagatgtttgagacttaatggtaagaaaagaccaacaatgaaagaggtttcaatgg |
130 |
Q |
| |
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|||||| ||||||| |||||| || ||| ||| |||||||| |||||| |||||||||||| |||||||||||||||||||||||| |||||| | |
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| T |
30106441 |
gaagcagggaaagacaccattcttgccatttcaagtcttgcaaggagatgcttgagacttaatcataagaaaagaccaacaatgaaagaagtttcagcag |
30106540 |
T |
|
| Q |
131 |
aattagaagcactaagaaaggtacagagttc |
161 |
Q |
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|||||||| |||||||||||| ||| ||||| |
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| T |
30106541 |
aattagaaacactaagaaaggcacaaagttc |
30106571 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 464 - 653
Target Start/End: Original strand, 30114587 - 30114770
Alignment:
| Q |
464 |
aataaaataatcgttgtccctatctgttgttcatattcaggaaatatctaccaacacaacaccctctacactgtcaaaaaaggtgattcttattatcact |
563 |
Q |
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||||||| |||| |||||||||||| || |||| ||| ||||||||||||||||| ||||| | ||||||||| ||||||||||| | || | ||||| |
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| T |
30114587 |
aataaaacaatcattgtccctatcttgtgctcatgttctggaaatatctaccaacataacactccttacactgtccaaaaaggtgatacatactttcact |
30114686 |
T |
|
| Q |
564 |
tggtaaatggtacttaccaaagaaagcctcatgacatgtcaggctacgaagggtcagagttactatacttctgtgaaaacatttcaattg |
653 |
Q |
| |
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||||||||| ||||||| ||||||||| |||||||| ||| ||||||||||| ||| ||| |||| |||||||||| |||||| |
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| T |
30114687 |
tggtaaatgaaacttacc----aaagcctcacaacatgtcaagctttgaagggtcagaattattatgcttc--tgaaaacattgcaattg |
30114770 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 676 - 715
Target Start/End: Original strand, 30126521 - 30126560
Alignment:
| Q |
676 |
aggagacaggtcaagctgaggttggttccctccacttttc |
715 |
Q |
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|||||||||||||| |||||||||||||| |||||||||| |
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| T |
30126521 |
aggagacaggtcaaactgaggttggttccttccacttttc |
30126560 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 257 - 321
Target Start/End: Complemental strand, 21427832 - 21427768
Alignment:
| Q |
257 |
tttcgctatcctcgcaaatggagtccacatacttctaaaacgccagattgatacatattattgat |
321 |
Q |
| |
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||||||||||| |||||||| ||||||| ||||||||| |||||||||||||| ||| ||||| |
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| T |
21427832 |
tttcgctatccctacaaatggaatccacatccttctaaaatgccagattgatacagattcttgat |
21427768 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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