View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18773_low_7 (Length: 578)
Name: NF18773_low_7
Description: NF18773
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18773_low_7 |
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Alignment Details
Target: chr3 (Bit Score: 515; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 515; E-Value: 0
Query Start/End: Original strand, 14 - 560
Target Start/End: Original strand, 46453879 - 46454425
Alignment:
| Q |
14 |
agactattagaaagaaagtcaacggtgaaatggaagtgattgtggaccactctttcaaatatagaaaattaaaactacatctaaatgattatgataatga |
113 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||| |
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| T |
46453879 |
agactattagaaagaaagtcaacggtgaaatggaagtgtttgtggaccactctttcaaatatagaaaattaaaacttcatgtaaatgattatgataatga |
46453978 |
T |
|
| Q |
114 |
aacgactagaataatcaatggtttattttcctcgtggatattaaccactaaccaaacatggttgttaacattagcgatattgcattgcatgagtcgcaaa |
213 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46453979 |
aacgactagaataatcaaaggtttattttcctcgtggatattaaccactaaccaaacatggttgttaacattagcgatattgcattgcatgagtcgcaaa |
46454078 |
T |
|
| Q |
214 |
tttaggcaaatgaaccattacatgctaaattaagccaagtaaaactatggttgaaagttgaaaccaccctctaaaattagagacacgacaacgcgcaaag |
313 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46454079 |
tttaggcaaaggaaccattacatgctaaattaagccaagtaaaactatggttgaaagttgaaaccaccctctaaaattagagacacgacaacgcgcaaag |
46454178 |
T |
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| Q |
314 |
ggttgagaacttgagaccaaaaataaacaccttctaattttatgtcaccaacattctgtataaaaaaggttgtttccattttggattcagaaatatttgc |
413 |
Q |
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||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
46454179 |
ggttgagaacttgtgaccaaaaaaaaacaccttctaattttatgtcaccaacattctgtataaaaaaggttgtttccattgtggattcagaaatatttgc |
46454278 |
T |
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| Q |
414 |
atagcttctcataaatggcttaaaacacaatttcctttctgtctctatagataattataacctttttctcttccccttctttaccactttataagcaacc |
513 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46454279 |
atagcttctcataaatggcttaaaacacaatttcctttctgtctctatagataattataacctttttctcttccccttctttaccactttataagcaacc |
46454378 |
T |
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| Q |
514 |
ttgaaggatataccaaggtggcgttttaacaaaatgcaagtccaggg |
560 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46454379 |
ttgaaggatataccaaggtggcgttttaacaaaatgcaagtccaggg |
46454425 |
T |
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