View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18773_low_8 (Length: 542)
Name: NF18773_low_8
Description: NF18773
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18773_low_8 |
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Alignment Details
Target: chr2 (Bit Score: 504; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 504; E-Value: 0
Query Start/End: Original strand, 17 - 528
Target Start/End: Original strand, 41102864 - 41103375
Alignment:
| Q |
17 |
agaaccaccagaatcaaccacgataaccgtttcgctatctccgacggtggattatcctcgtcgtgaattggacttttgtagtaagattccggtaccggag |
116 |
Q |
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| T |
41102864 |
agaaccaccagaatcaaccacgataaccgtttcgctatctccgacggtggattatcctcgtcgtgaattggacttttgtagtaagattccggtaccggag |
41102963 |
T |
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| Q |
117 |
tttgtggccaatcggaaactatatcgccgattgcttcgctgtaatcggcgagaagtgcgatgtagttcatgacatagcgtgtgagaggatggattcctcc |
216 |
Q |
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| T |
41102964 |
tttgtggccaatcggaaactatatcgccgattgcttcgctgtaatcggcgagaagtgcgatgtagttcatgacatagcgtgtgagaggatggattcctcc |
41103063 |
T |
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| Q |
217 |
gcctggtaccggaatcttcgaagattccttctgaatcgccgattcaaaatcggttaacattgttctaaccgtttcaccgagtctaacctgtgaagcaacg |
316 |
Q |
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| T |
41103064 |
gcctggtaccggaatcttcgaagattccttctgaatcgccgattcaaaatcggttaacattgttctaaccgtttcaccgagtctaacctgtgaagcaacg |
41103163 |
T |
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| Q |
317 |
acttgcgatctgatcggtgagtttgattccgacgaaaaaattgattcaatttgattccaattttctgaaatcgcttcgtataaatcaagcgttctgaaca |
416 |
Q |
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| T |
41103164 |
acttgcgatctgatcggtgagtttgattccgacgaaaaaattgattcaatttgattccaattttctgaaatcgcttcgtataaatcaagcgttctgaaca |
41103263 |
T |
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| Q |
417 |
ttttctccggagttttcttgcattttgccacgttttccgggaatgcaaacagcatcagtgcgctttctctgcaaatatcagcgaaacacgattctccgat |
516 |
Q |
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| T |
41103264 |
ttttctccggagttttcttgcattttgccacgttttccgggaatgcaaacagcattaatgcgctttctctgcaaatatcagcgaaacacgattctccgat |
41103363 |
T |
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| Q |
517 |
gttgttcttctc |
528 |
Q |
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| T |
41103364 |
gttgttcttctc |
41103375 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 53; Significance: 4e-21; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 380 - 444
Target Start/End: Original strand, 23129044 - 23129108
Alignment:
| Q |
380 |
tctgaaatcgcttcgtataaatcaagcgttctgaacattttctccggagttttcttgcattttgc |
444 |
Q |
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| T |
23129044 |
tctgaaattgcttcgtataaatcaagagttctgaacattttctcaggagttttcttgcattttgc |
23129108 |
T |
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