View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18773_low_9 (Length: 518)
Name: NF18773_low_9
Description: NF18773
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18773_low_9 |
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Alignment Details
Target: chr5 (Bit Score: 359; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 359; E-Value: 0
Query Start/End: Original strand, 12 - 501
Target Start/End: Original strand, 17890992 - 17891476
Alignment:
| Q |
12 |
atgaactaaccttgcttgcaatccattgcacaaacgattccaaaactccatgatttggttaccacccaaattagaaccagtttccaatccattgacacat |
111 |
Q |
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| T |
17890992 |
atgaactaaccttgcttgtaatccattgcacaaacgattccaaaactccatgatttggttaccacccaaattggaaccagtttccaatccattgacacat |
17891091 |
T |
|
| Q |
112 |
agcaaatgcccaaatccattagagtgaaatacaccatgcatcatatgtccctctaattctattaatttgttggacttaccactaatattcattgttgtac |
211 |
Q |
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| T |
17891092 |
agcaaatgcccaaatccattagagtgaaatacaccatgcatcatatgtccctctaattctattaatttgttggacttaccactaatattca---ttgtac |
17891188 |
T |
|
| Q |
212 |
catttgaatcacagcagctttcacagcttgtgcagctacttagtgtctcctttgaaggtaataagaaatgatacttcttattgcaaatgaaatggttgcc |
311 |
Q |
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| T |
17891189 |
catttgaatcacagcagttttcacagcttgtgcagctacttagtgtctcctttgaaggtaataggaaatgatacttcttattgcaaatgaaatggtttcc |
17891288 |
T |
|
| Q |
312 |
ccagcctaaagtccagttaatttgatgtaattaagatcaaaattaaaagtgatattcaaccagcat-gtaacatgtattagatataagaatttaattt-a |
409 |
Q |
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| T |
17891289 |
ccagcctaaattccagtcaatttgatgtaattaagatcaatagtaaaagtga---tcaaccagcataataacatgtattacatataagaatttaatttaa |
17891385 |
T |
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| Q |
410 |
nnnnnnnattgagagatataagagtttaatttgatttatctaaaagaatgagttgaatttaatttaatttgtatatattggtagcatgatat |
501 |
Q |
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| T |
17891386 |
tttttttattgagagatataagagtttaatttgatttatctaaaaaaatgagttaagtttaa-ttaatttgtatatattggtagcaagatat |
17891476 |
T |
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