View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18774_low_1 (Length: 645)

Name: NF18774_low_1
Description: NF18774
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18774_low_1
NF18774_low_1
[»] chr7 (3 HSPs)
chr7 (89-570)||(45047538-45048025)
chr7 (332-419)||(25428012-25428100)
chr7 (37-133)||(45043775-45043872)
[»] chr6 (3 HSPs)
chr6 (284-622)||(25571909-25572270)
chr6 (284-622)||(26006377-26006738)
chr6 (284-570)||(26125142-26125441)
[»] chr2 (1 HSPs)
chr2 (284-421)||(23362962-23363099)
[»] chr4 (1 HSPs)
chr4 (284-376)||(31606053-31606145)
[»] chr5 (3 HSPs)
chr5 (284-376)||(12632991-12633083)
chr5 (295-394)||(2775810-2775909)
chr5 (303-376)||(24093988-24094062)
[»] chr1 (1 HSPs)
chr1 (296-376)||(45291613-45291693)
[»] chr3 (2 HSPs)
chr3 (37-132)||(38345862-38345956)
chr3 (43-119)||(38358225-38358300)


Alignment Details
Target: chr7 (Bit Score: 382; Significance: 0; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 382; E-Value: 0
Query Start/End: Original strand, 89 - 570
Target Start/End: Original strand, 45047538 - 45048025
Alignment:
Q  89 tacatctacaaatccaattccaataataattaacatgtaagtaaacactaatagagatttatcacaaaaatccnnnnnnnn---ccccttctaccacaat 185  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||           ||||||||||||||||    
T  45047538 tacatctacaaatccaattccaataataattaacatgtaagtaaacactaatagagatttatcacaaaaatcctttttttttttccccttctaccacaat 45047637  T
Q  186 tgtatagaccaagtacatgaattaactgataaaatttataacaatgaataggaacaaaatgagnnnnnnnctccagataatatcttaatcttaatcttaa 285  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||       ||||||||||||||||||||||||||||||    
T  45047638 tgtatagaccaagtacatgaattaactgataaaatttataacaatgaataggaataaaatgagtttttttctccagataatatcttaatcttaatcttaa 45047737  T
Q  286 aaatttgccccaatccaatgtgtcaaaattctaagcctcctacaataaatcatcatattttataatctcattttatcatcacttatagtaatagggacca 385  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45047738 aaatttgccccaatctaatgtgtcaaaattctaagcctcctacaataaatcatcatattttataatctcattttatcatcacttatagtaatagggacca 45047837  T
Q  386 caaaaccataacaatttcaaatttacacaataaaaattgattttagctcataaaaatttgaatgtgttaatttccctctaagaaatgtca--ttttcagg 483  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||  ||||||||    
T  45047838 caaaaccataacaattttaaatttacacaataaaaattgattttagctcgtaaaaatttgaatgtgttaatttccctctaagaaatgtcattttttcagg 45047937  T
Q  484 tgtattattaag-aaaaaacaaatgctaaatttgaaatgaggcccaactatgctaagcccagcactcaaactctcctcttttcagaat 570  Q
    ||| |||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  45047938 tgtgttattaagaaaaaaacaaatgttaaatttgaaatgaggcccaactatgctaagcccagcactcaaactctcctattttcagaat 45048025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 332 - 419
Target Start/End: Original strand, 25428012 - 25428100
Alignment:
Q  332 aaatcatcatattttataatctcattttatcatcacttatagtaatagggaccacaaaaccataacaatt-tcaaatttacacaataaa 419  Q
    ||||||||| |||||| ||   || ||||||||||| | || |||||||||||||||||||||||||||| ||| |||| |||||||||    
T  25428012 aaatcatcagattttagaagtacaatttatcatcacatttaataatagggaccacaaaaccataacaattctcacattttcacaataaa 25428100  T

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Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 37 - 133
Target Start/End: Original strand, 45043775 - 45043872
Alignment:
Q  37 tattgccccagaaattcgaatgataccacgagttgcatcaatggttgtaggatacatctacaaatccaattccaataata--attaacatgtaagtaaa 133  Q
    |||||| |||||||||||||| |||||  | |||||||| || ||   |||| ||||||||||| |||||||||||||||  ||||| |||||||||||    
T  45043775 tattgctccagaaattcgaataataccgtgtgttgcatcgatagtaa-aggaaacatctacaaagccaattccaataatatgattaaaatgtaagtaaa 45043872  T

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Target: chr6 (Bit Score: 230; Significance: 1e-126; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 230; E-Value: 1e-126
Query Start/End: Original strand, 284 - 622
Target Start/End: Original strand, 25571909 - 25572270
Alignment:
Q  284 aaaaatttgccccaatccaatgtgtcaaaattctaagcctcctacaataaatcatcatattttataatctcattttatcatcacttatagtaatagggac 383  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  25571909 aaaaatttgccccaatccaatgtgtcaaaattctaagcctcctacaataaatcatcatattttataatctcattttaccatcacttatagtaatagggac 25572008  T
Q  384 cacaaaaccataacaatttcaaatttacacaata-----------aaaattgattttagctcataaaaatttgaatgtgttaatttccctctaagaaatg 472  Q
     |||||||||||||||||||||||||||||||||           |||||| ||||||| ||||||||| ||||||||||||||||||||||||||||||    
T  25572009 aacaaaaccataacaatttcaaatttacacaataaaaataacatcaaaattcattttagttcataaaaaattgaatgtgttaatttccctctaagaaatg 25572108  T
Q  473 tcattttcaggtgtattattaag-aaaaaacaaatgctaaatttgaaatgaggcccaactatgctaagcccagcactcaaactctcctcttttcagaa-- 569  Q
     ||||||||||||| |||||||| |||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||      
T  25572109 gcattttcaggtgtgttattaagaaaaaaacaaatgttcaatttgaaatgaggcccaactatgctaagcccagcactcaaactctcctcttttcaaaatc 25572208  T
Q  570 ---------tttcacattggaaaatctctctttcaccttgatagtgaaaattctgcagacaa 622  Q
             |||||| |||||||||||||||||||||||||||||||||||| |||||||||    
T  25572209 attcactgttttcacgttggaaaatctctctttcaccttgatagtgaaaattttgcagacaa 25572270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 230; E-Value: 1e-126
Query Start/End: Original strand, 284 - 622
Target Start/End: Original strand, 26006377 - 26006738
Alignment:
Q  284 aaaaatttgccccaatccaatgtgtcaaaattctaagcctcctacaataaatcatcatattttataatctcattttatcatcacttatagtaatagggac 383  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  26006377 aaaaatttgccccaatccaatgtgtcaaaattctaagcctcctacaataaatcatcatattttataatctcattttaccatcacttatagtaatagggac 26006476  T
Q  384 cacaaaaccataacaatttcaaatttacacaata-----------aaaattgattttagctcataaaaatttgaatgtgttaatttccctctaagaaatg 472  Q
     |||||||||||||||||||||||||||||||||           |||||| ||||||| ||||||||| ||||||||||||||||||||||||||||||    
T  26006477 aacaaaaccataacaatttcaaatttacacaataaaaataacatcaaaattcattttagttcataaaaaattgaatgtgttaatttccctctaagaaatg 26006576  T
Q  473 tcattttcaggtgtattattaag-aaaaaacaaatgctaaatttgaaatgaggcccaactatgctaagcccagcactcaaactctcctcttttcagaa-- 569  Q
     ||||||||||||| |||||||| |||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||      
T  26006577 gcattttcaggtgtgttattaagaaaaaaacaaatgttcaatttgaaatgaggcccaactatgctaagcccagcactcaaactctcctcttttcaaaatc 26006676  T
Q  570 ---------tttcacattggaaaatctctctttcaccttgatagtgaaaattctgcagacaa 622  Q
             |||||| |||||||||||||||||||||||||||||||||||| |||||||||    
T  26006677 attcactgttttcacgttggaaaatctctctttcaccttgatagtgaaaattttgcagacaa 26006738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 284 - 570
Target Start/End: Original strand, 26125142 - 26125441
Alignment:
Q  284 aaaaatttgccccaatccaatgtgtcaaaattctaagcctcctacaataaatcatcatattttataatctcattttatcatcacttatagtaatagggac 383  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  26125142 aaaattttgccccaatccaatgtgtcaaaattctaagcctcctacaataaatcatcatattttataatctcattttaccatcacttatagtaatagggac 26125241  T
Q  384 cacaaaaccataacaatttcaaatttacacaata-----------aaaattgattttagctcataaaaatttgaatgtgttaatttccctctaagaaatg 472  Q
     |||||||||||||||||||||||||||||||||           |||||| ||||||| ||||||||| ||||||||||||||||||||||||||||||    
T  26125242 aacaaaaccataacaatttcaaatttacacaataaaaataacatcaaaattcattttagttcataaaaaattgaatgtgttaatttccctctaagaaatg 26125341  T
Q  473 tcattttcaggtgtattattaag-aaaaaacaaatgctaaatttgaaatgaggcccaactatgctaagcccagcactcaaactctcctc-ttttcagaat 570  Q
    ||||||||| |||| |||||||| |||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  26125342 tcattttcaagtgtgttattaagaaaaaaacaaatgttcaatttgaaatgaggcccaactatgctaagcccagcactcaaactctcctcattttcagaat 26125441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 122; Significance: 3e-62; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 122; E-Value: 3e-62
Query Start/End: Original strand, 284 - 421
Target Start/End: Original strand, 23362962 - 23363099
Alignment:
Q  284 aaaaatttgccccaatccaatgtgtcaaaattctaagcctcctacaataaatcatcatattttataatctcattttatcatcacttatagtaatagggac 383  Q
    ||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  23362962 aaaaaattgcaccaatccaatgtgtcaaaattctaagcctcctacaataaatcatcattttttataatctcattttatcatcacttatagtaatagggac 23363061  T
Q  384 cacaaaaccataacaatttcaaatttacacaataaaaa 421  Q
    ||||||||||||||||||| ||||||||||||||||||    
T  23363062 cacaaaaccataacaatttgaaatttacacaataaaaa 23363099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 69; Significance: 1e-30; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 284 - 376
Target Start/End: Original strand, 31606053 - 31606145
Alignment:
Q  284 aaaaatttgccccaatccaatgtgtcaaaattctaagcctcctacaataaatcatcatattttataatctcattttatcatcacttatagtaa 376  Q
    ||||||||||  ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||| || ||||||    
T  31606053 aaaaatttgcttcaatccaatgtgtcaaaattctaagccacctacaataaatcatcatattttataatctcattttatcgtcatttttagtaa 31606145  T

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Target: chr5 (Bit Score: 65; Significance: 3e-28; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 284 - 376
Target Start/End: Complemental strand, 12633083 - 12632991
Alignment:
Q  284 aaaaatttgccccaatccaatgtgtcaaaattctaagcctcctacaataaatcatcatattttataatctcattttatcatcacttatagtaa 376  Q
    ||||||||||  ||||| ||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||| || ||||||    
T  12633083 aaaaatttgcttcaatctaatgtgtcaaaattctaagccacctacaataaatcatcatatttcataatctcattttatcatcatttttagtaa 12632991  T

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Target: chr5; HSP #2
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 295 - 394
Target Start/End: Original strand, 2775810 - 2775909
Alignment:
Q  295 ccaatccaatgtgtcaaaattctaagcctcctacaataaatcatcatattttataatctcattttatcatcacttatagtaatagggaccacaaaaccat 394  Q
    ||||||||||||||||||||||||||||||| |    ||||||||| ||||| |||   |||||||||||||| | ||||||||||||||||||||||||    
T  2775810 ccaatccaatgtgtcaaaattctaagcctccaatgccaaatcatcaaattttttaagtgcattttatcatcacatttagtaatagggaccacaaaaccat 2775909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 303 - 376
Target Start/End: Original strand, 24093988 - 24094062
Alignment:
Q  303 atgtgtcaaaattctaagcctcctacaataaatcatcatattttat-aatctcattttatcatcacttatagtaa 376  Q
    |||||||||||||||||||| ||||||| || |||||| || |||| || ||||||||| ||||| || ||||||    
T  24093988 atgtgtcaaaattctaagccacctacaaaaattcatcacatgttataaagctcattttaacatcatttttagtaa 24094062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 57; Significance: 2e-23; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 296 - 376
Target Start/End: Complemental strand, 45291693 - 45291613
Alignment:
Q  296 caatccaatgtgtcaaaattctaagcctcctacaataaatcatcatattttataatctcattttatcatcacttatagtaa 376  Q
    |||||||||||||||||||||||||||  ||| |||| ||||||||||||||||||||||||||||||||| || ||||||    
T  45291693 caatccaatgtgtcaaaattctaagccatctataatatatcatcatattttataatctcattttatcatcatttttagtaa 45291613  T

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Target: chr3 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 37 - 132
Target Start/End: Complemental strand, 38345956 - 38345862
Alignment:
Q  37 tattgccccagaaattcgaatgataccacgagttgcatcaatggttgtaggatacatctacaaatccaattccaataataattaacatgtaagtaa 132  Q
    |||||| |||||||||||||| |||||| | ||||||||||| |||| | ||||||||||||  ||||||||||| |||||  || ||||||||||    
T  38345956 tattgcaccagaaattcgaataataccatgtgttgcatcaat-gttgaatgatacatctacaggtccaattccaacaataacgaaaatgtaagtaa 38345862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 43 - 119
Target Start/End: Complemental strand, 38358300 - 38358225
Alignment:
Q  43 cccagaaattcgaatgataccacgagttgcatcaatggttgtaggatacatctacaaatccaattccaataataatt 119  Q
    |||| ||||| ||||||||||| ||||||||| |||| | ||||||||||||| ||||||| |||| | ||||||||    
T  38358300 cccataaatttgaatgataccatgagttgcattaatgat-gtaggatacatctgcaaatccgattctactaataatt 38358225  T

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