View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18774_low_11 (Length: 226)
Name: NF18774_low_11
Description: NF18774
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18774_low_11 |
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Alignment Details
Target: chr7 (Bit Score: 177; Significance: 1e-95; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 177; E-Value: 1e-95
Query Start/End: Original strand, 1 - 220
Target Start/End: Original strand, 43403582 - 43403799
Alignment:
| Q |
1 |
ctcctcatgacattaaattaatattcaagatgaccttagtttaatggttacacttacaccttgatatgtctggccatgctgccttataaatgctgtcata |
100 |
Q |
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| T |
43403582 |
ctcctcatgacattaaatgaatattcaagatgaccttagtttaatggttacacttacaccttgttatgtctggccatgctgccttataaatgctgtcata |
43403681 |
T |
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| Q |
101 |
tctagnnnnnnnnnnaagcaaattcttaaatgagacatatccaagttgtttaagaatttccggaaagaaattgatctggaaattcttttcaaccacacaa |
200 |
Q |
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| T |
43403682 |
tctagtttttttt--aagcaaattcttaaatgagacatatccaagttgtttaagaatttccggaaagaaattgatctggaaattcttttcaaccacacaa |
43403779 |
T |
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| Q |
201 |
taaccaattttgttagtttc |
220 |
Q |
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|||||||||||||||||||| |
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| T |
43403780 |
taaccaattttgttagtttc |
43403799 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 112; E-Value: 9e-57
Query Start/End: Original strand, 20 - 215
Target Start/End: Original strand, 41262745 - 41262942
Alignment:
| Q |
20 |
aatattcaagatgaccttagtttaatggttacacttacaccttgatatgtctggccatgctgc----cttataaatgctgtcatatctagnnnnnnnnnn |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |||| |||||||| ||| |||||||||| |||||||| || |
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| T |
41262745 |
aatattcaagatgaccttagtttaatggttacacttacaccttgttatgcctggccatactgaatgtcttataaatgttgtcatatacagtttgtttg-- |
41262842 |
T |
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| Q |
116 |
aagcaaattcttaaatgagacatatccaagttgtttaagaatttccggaaagaaattgatctggaaattcttttcaaccacacaataaccaattttgtta |
215 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
41262843 |
aagcaaattcttaaatgagacatatccacgttgtttaagaatttccggaaagaaattgaactggaaattcttttcaaccacacaataaccaattttgtta |
41262942 |
T |
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