View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18774_low_2 (Length: 577)
Name: NF18774_low_2
Description: NF18774
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18774_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 431; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 431; E-Value: 0
Query Start/End: Original strand, 16 - 557
Target Start/End: Original strand, 38298133 - 38298676
Alignment:
| Q |
16 |
acatgaacatctgtatggtttatggtaaaattaattaannnnnnnn-ggaaatgtagcaagcagcaattgtcttgttatgtacttacatttttgtaaaac |
114 |
Q |
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| T |
38298133 |
acatgaacatctgtatggtttatggtaaaattaattaatttttttttggaaatgtagcaagcagcaattgtcttgttatgtacttacatttttgtaatac |
38298232 |
T |
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| Q |
115 |
aaaatctcttttgatactagcatgttcattgctgattggtttgagtattcactgcannnnnnnctttcttttgttgatgatctagtgtagattttcctgg |
214 |
Q |
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| T |
38298233 |
aaaatctcttttgatactagcatgtccattgctgattggtttgagtattcactgcatttttttctttcttttgttgatgatctagtgtagattttcctgg |
38298332 |
T |
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| Q |
215 |
taaatatcaagattgggcggccacagatcccttggatctttttcaagctcaggttataaagaatgaatcaaatccaaaggtattttgtta-aataatcct |
313 |
Q |
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| T |
38298333 |
taaatatcaagattgggcggccacagatcccttggatctttttcaagctcaggttataaagaatgaatcaaatccaaaggtattttgttataataatcct |
38298432 |
T |
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| Q |
314 |
ctcggtttgagttcctctatatcttttaagagaatcatttatgcattatttattagagctattagact-tatttagatttgnnnnnnnaaactgagaccc |
412 |
Q |
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| T |
38298433 |
ctcggtttgagttcctctatatcttttaagagaatcatttatgcattatttattagagctattagactgtatttatatttgttttttttaactgagaccc |
38298532 |
T |
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| Q |
413 |
cattttgtgatgctttatatggtcattagaagaatatttttgtctgtgatatgtctcatgtatttcccaaagaatgttgaggatacttttttacagaccg |
512 |
Q |
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| T |
38298533 |
cattttgtgatgctttatatggtcattagaagaata-ttttgtctgtgatatgtctcatgtatttcccaaagaatgttgaggatacttttttacagaccg |
38298631 |
T |
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| Q |
513 |
tttgaatatttctagaagtttgtttggaagaatattctggaacat |
557 |
Q |
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| T |
38298632 |
tttgaatatttctagaagtttgtttggaagaatattctggaacat |
38298676 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 487 - 555
Target Start/End: Original strand, 38298769 - 38298838
Alignment:
| Q |
487 |
tgttgaggatacttt-tttacagaccgtttgaatatttctagaagtttgtttggaagaatattctggaac |
555 |
Q |
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|||| |||||||||| ||||| |||||||||||||||||||||||||||| | ||||||||||||||||| |
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| T |
38298769 |
tgtttaggatactttctttacggaccgtttgaatatttctagaagtttgtgtagaagaatattctggaac |
38298838 |
T |
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