View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18774_low_3 (Length: 536)
Name: NF18774_low_3
Description: NF18774
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18774_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 146; Significance: 1e-76; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 146; E-Value: 1e-76
Query Start/End: Original strand, 1 - 412
Target Start/End: Complemental strand, 30654470 - 30654067
Alignment:
| Q |
1 |
aaaacacaaattcatgct-gtagtcgagaaaataggacaatagaggtaaactcacccctaaacagcaccgtagtcgcaggaccaaacaccacccaccagc |
99 |
Q |
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| T |
30654470 |
aaaaaacaaattcatgctcgtagtcgagaaaacacgacaatagtggtaa-ctcgtccttgaacagaaccatcattgcaggaccaaacaccacccaccagc |
30654372 |
T |
|
| Q |
100 |
ggtccatccccatagatcaaaaatatcccataacaacagaaaccagacctgttgaggaaaaattatatagaatcagaagtcaggaattcaactgaattga |
199 |
Q |
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| T |
30654371 |
agttcatcaccatatatcaaaaataccccataacaacataaactagacctgttaaggaaaaattagatagaattagaagtcagaacttcaactgaattga |
30654272 |
T |
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| Q |
200 |
gttcaaaacagtaacacacgcgagctaaacaacaa---caaactccaaaacagtaggcatctaatcacatctggaggcaactaacaaaaagtttgcaaca |
296 |
Q |
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| T |
30654271 |
gttcaaaacagtaacgcacgctagctaaacaacaacatcaaaccccaaaactgtaggcatctaatcacatttggaggcaactaa-gaaaagagtgcaaca |
30654173 |
T |
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| Q |
297 |
tgctaaaagctatagcagtaagacaaagtagaaaccagtcgagattccaaagcagatgcagaaaaactagacataattgtatcgaaaatctcagcataga |
396 |
Q |
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| T |
30654172 |
tgccaaaagctat---gttgcgattgcgt-------agtcgagattgcgcagcagaggcagaaaaactagacagaattgtatcgaaaatctcagcataga |
30654083 |
T |
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| Q |
397 |
ctcccaagaagccatc |
412 |
Q |
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| T |
30654082 |
ctcccaacaagccatc |
30654067 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 469 - 513
Target Start/End: Complemental strand, 10868817 - 10868773
Alignment:
| Q |
469 |
ttatagttctaatcacataactcacaaaattgaagctggattata |
513 |
Q |
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| T |
10868817 |
ttatagttctaatcacataactcacaaaactgaagctggattata |
10868773 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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