View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18774_low_4 (Length: 505)

Name: NF18774_low_4
Description: NF18774
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18774_low_4
NF18774_low_4
[»] chr1 (4 HSPs)
chr1 (292-481)||(11619364-11619553)
chr1 (5-62)||(11619074-11619130)
chr1 (160-195)||(11619233-11619268)
chr1 (292-320)||(34768690-34768718)
[»] chr2 (2 HSPs)
chr2 (399-457)||(18182607-18182665)
chr2 (399-457)||(18182495-18182553)
[»] chr4 (3 HSPs)
chr4 (398-457)||(22435344-22435403)
chr4 (331-365)||(8483522-8483556)
chr4 (399-457)||(22435458-22435516)
[»] chr7 (4 HSPs)
chr7 (400-457)||(42494766-42494823)
chr7 (323-365)||(35912157-35912199)
chr7 (409-453)||(16648926-16648970)
chr7 (409-453)||(17623287-17623331)
[»] chr8 (1 HSPs)
chr8 (399-454)||(3647495-3647550)
[»] chr3 (1 HSPs)
chr3 (402-457)||(26960945-26961000)
[»] chr6 (2 HSPs)
chr6 (402-456)||(28606579-28606633)
chr6 (399-443)||(15057136-15057180)


Alignment Details
Target: chr1 (Bit Score: 162; Significance: 3e-86; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 162; E-Value: 3e-86
Query Start/End: Original strand, 292 - 481
Target Start/End: Original strand, 11619364 - 11619553
Alignment:
Q  292 caacggtaccaataataacagttcggttcggaacactttagttcggttaagttattttaaatttaacaaacaatctagttccataccaaaccatgtccac 391  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11619364 caacggtaccaataataacagttcggttcggaacacttcagttcggttaagttattttaaatttaacaaacaatctagttccataccaaaccatgtccac 11619463  T
Q  392 cccataatagcacttgagtgacattgggttgtcaatgtcatgcgacattggcaagccacaatgtcagtaaagtgctacgcgtcctccccc 481  Q
    |||| |||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||| ||||||||||| ||||| |||||    
T  11619464 cccagaatagcacttgagtgacattgggttgccaatgtcatgcgacattggcaaaccacaatgtcactaaagtgctactcgtccaccccc 11619553  T

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Target: chr1; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 5 - 62
Target Start/End: Original strand, 11619074 - 11619130
Alignment:
Q  5 gtgctagttagcaaaaatgaaagtgagaagaacaattttctaaaaggagtgatttact 62  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||    
T  11619074 gtgctagttag-aaaaatgaaagtgagaagaacaattttctaaaaggagtaatttact 11619130  T

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Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 160 - 195
Target Start/End: Original strand, 11619233 - 11619268
Alignment:
Q  160 ttattaacaattttggaactgaactgaaatagttcg 195  Q
    ||||||||||||||||||||||||||||||||||||    
T  11619233 ttattaacaattttggaactgaactgaaatagttcg 11619268  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 292 - 320
Target Start/End: Complemental strand, 34768718 - 34768690
Alignment:
Q  292 caacggtaccaataataacagttcggttc 320  Q
    |||||||||||||||||||||||||||||    
T  34768718 caacggtaccaataataacagttcggttc 34768690  T

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Target: chr2 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 399 - 457
Target Start/End: Complemental strand, 18182665 - 18182607
Alignment:
Q  399 tagcacttgagtgacattgggttgtcaatgtcatgcgacattggcaagccacaatgtca 457  Q
    ||||||||| ||||||||||| || |||||||||| ||||||||||| |||||||||||    
T  18182665 tagcacttgggtgacattggggtgccaatgtcatgtgacattggcaaaccacaatgtca 18182607  T

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Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 399 - 457
Target Start/End: Original strand, 18182495 - 18182553
Alignment:
Q  399 tagcacttgagtgacattgggttgtcaatgtcatgcgacattggcaagccacaatgtca 457  Q
    ||||||||| ||||||||||| || |||||||||| ||||||||| | |||||||||||    
T  18182495 tagcacttgggtgacattggggtgccaatgtcatgtgacattggccaaccacaatgtca 18182553  T

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Target: chr4 (Bit Score: 36; Significance: 0.00000000005; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 398 - 457
Target Start/End: Original strand, 22435344 - 22435403
Alignment:
Q  398 atagcacttgagtgacattgggttgtcaatgtcatgcgacattggcaagccacaatgtca 457  Q
    |||||||||| |||| |||||| || |||||||||| ||||||||||| |||||||||||    
T  22435344 atagcacttgggtgatattggggtgccaatgtcatgtgacattggcaaaccacaatgtca 22435403  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 331 - 365
Target Start/End: Complemental strand, 8483556 - 8483522
Alignment:
Q  331 agttcggttaagttattttaaatttaacaaacaat 365  Q
    ||||||||| |||||||||||||||||||||||||    
T  8483556 agttcggttcagttattttaaatttaacaaacaat 8483522  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 399 - 457
Target Start/End: Complemental strand, 22435516 - 22435458
Alignment:
Q  399 tagcacttgagtgacattgggttgtcaatgtcatgcgacattggcaagccacaatgtca 457  Q
    ||||||||| ||||||||||| || |||||| ||||||||||| | | |||||||||||    
T  22435516 tagcacttgggtgacattggggtgccaatgttatgcgacattgaccaaccacaatgtca 22435458  T

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Target: chr7 (Bit Score: 34; Significance: 0.0000000007; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 400 - 457
Target Start/End: Original strand, 42494766 - 42494823
Alignment:
Q  400 agcacttgagtgacattgggttgtcaatgtcatgcgacattggcaagccacaatgtca 457  Q
    ||||||||| |||||||||| | | ||||||||| ||||||||||| |||||||||||    
T  42494766 agcacttgattgacattggggtattaatgtcatgtgacattggcaaaccacaatgtca 42494823  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 323 - 365
Target Start/End: Original strand, 35912157 - 35912199
Alignment:
Q  323 aacactttagttcggttaagttattttaaatttaacaaacaat 365  Q
    |||| ||||||| |||||||||||||||||||||| |||||||    
T  35912157 aacaatttagtttggttaagttattttaaatttaaaaaacaat 35912199  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 409 - 453
Target Start/End: Complemental strand, 16648970 - 16648926
Alignment:
Q  409 gtgacattgggttgtcaatgtcatgcgacattggcaagccacaat 453  Q
    ||||||||||| || |||||||||| ||||||||||| |||||||    
T  16648970 gtgacattggggtgccaatgtcatgtgacattggcaaaccacaat 16648926  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 409 - 453
Target Start/End: Complemental strand, 17623331 - 17623287
Alignment:
Q  409 gtgacattgggttgtcaatgtcatgcgacattggcaagccacaat 453  Q
    ||||||||||| || |||||||||| ||||||||||| |||||||    
T  17623331 gtgacattggggtgccaatgtcatgtgacattggcaaaccacaat 17623287  T

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Target: chr8 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 399 - 454
Target Start/End: Complemental strand, 3647550 - 3647495
Alignment:
Q  399 tagcacttgagtgacattgggttgtcaatgtcatgcgacattggcaagccacaatg 454  Q
    ||||||||| ||||||||||| || |||||||||| ||||||||| | ||||||||    
T  3647550 tagcacttgggtgacattggggtgccaatgtcatgtgacattggccaaccacaatg 3647495  T

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Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 402 - 457
Target Start/End: Complemental strand, 26961000 - 26960945
Alignment:
Q  402 cacttgagtgacattgggttgtcaatgtcatgcgacattggcaagccacaatgtca 457  Q
    |||||| ||||||||| | ||||||||||||| ||||||||| | |||||||||||    
T  26961000 cacttgggtgacattgaggtgtcaatgtcatgtgacattggccaaccacaatgtca 26960945  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000005; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 402 - 456
Target Start/End: Complemental strand, 28606633 - 28606579
Alignment:
Q  402 cacttgagtgacattgggttgtcaatgtcatgcgacattggcaagccacaatgtc 456  Q
    |||||| ||||||||||| || |||||||||| ||||||||| | ||||||||||    
T  28606633 cacttgggtgacattggggtgccaatgtcatgtgacattggccaaccacaatgtc 28606579  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 399 - 443
Target Start/End: Complemental strand, 15057180 - 15057136
Alignment:
Q  399 tagcacttgagtgacattgggttgtcaatgtcatgcgacattggc 443  Q
    ||||||||  ||||||||||| ||||||||||||| |||||||||    
T  15057180 tagcactttggtgacattggggtgtcaatgtcatgtgacattggc 15057136  T

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