View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18774_low_6 (Length: 399)
Name: NF18774_low_6
Description: NF18774
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18774_low_6 |
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Alignment Details
Target: chr5 (Bit Score: 353; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 353; E-Value: 0
Query Start/End: Original strand, 13 - 385
Target Start/End: Original strand, 37838849 - 37839221
Alignment:
| Q |
13 |
aatatgaataagttacgagcctaatgtatctatttataatctttaatttctgatacgcagcctattagatttagagttccatgctagcatccatagttaa |
112 |
Q |
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| T |
37838849 |
aatatgaataagttacgagcctagtgtatctatttataatctttaatttctgatacgcagcctattagatttagagtgccatgctagcatccatagttaa |
37838948 |
T |
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| Q |
113 |
ctatttcttgattatcaacttttccaactaatccactctttagtactgatatgttagttttagattccacagatttgtttctgtacatatgcacacttct |
212 |
Q |
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| T |
37838949 |
ctatttcttgattatcaacttttccaactaatccactctttagtactgatatgttagttttagattccacagatttgtttctgtacatatgcacacttct |
37839048 |
T |
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| Q |
213 |
tcctccaagaattacatctgtttcattttggccaaacttgatatgcgggctatctggagaatttctttaagcttttgatccatacacacaactttggcac |
312 |
Q |
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| T |
37839049 |
tcctccaagaattacatctgtttcattttggccaaacttgatatgcggcctatctggaggatttctttaagcttttgatccatacacacaactttggcac |
37839148 |
T |
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| Q |
313 |
atgtgagtgagtttttagtcattttgcgcttccattctatactgaaatacaactttgaaatttttaactaaat |
385 |
Q |
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| T |
37839149 |
atgtgagtgagtttttagtcattttgcgcttccattctatactgaaatacagctttgaaatttttaactaaat |
37839221 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 201 - 348
Target Start/End: Complemental strand, 35025059 - 35024912
Alignment:
| Q |
201 |
atgcacacttcttcctccaagaattacatctgtttcattttggccaaacttgatatgcgggctatctggagaatttcttt-aagcttttgatccatacac |
299 |
Q |
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| T |
35025059 |
atgcacgcatcttcctccaagaatcacctttgtttcatataggtcaaacttgacatgcggcatttctggagatttgctttcaagcttttgatccatatac |
35024960 |
T |
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| Q |
300 |
acaactttggcacatgtgagtgagtttttagtcattttgcgcttccatt |
348 |
Q |
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| T |
35024959 |
acaattttggcacatgtgagtga-tttttagtcattttgtacttccatt |
35024912 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 201 - 348
Target Start/End: Original strand, 36867718 - 36867865
Alignment:
| Q |
201 |
atgcacacttcttcctccaagaattacatctgtttcattttggccaaacttgatatgcgggctatctggagaatttcttt-aagcttttgatccatacac |
299 |
Q |
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| T |
36867718 |
atgcacacctcttcctacaagaattacctttgtttcatacagtccaaacttgatatgtgccgtgtctggaggttttctttcaagcttttgatccatgtac |
36867817 |
T |
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| Q |
300 |
acaactttggcacatgtgagtgagtttttagtcattttgcgcttccatt |
348 |
Q |
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| T |
36867818 |
acaagtttggcacacgtgagtga-cttttagtcattttgtacttccatt |
36867865 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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