View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18775_high_13 (Length: 365)
Name: NF18775_high_13
Description: NF18775
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18775_high_13 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 262; Significance: 1e-146; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 9 - 350
Target Start/End: Original strand, 1738952 - 1739286
Alignment:
| Q |
9 |
gacatcatcacataagtatttgggatgtatttcctcacaacatcataagctgccttgtaatagttcttgaggctatcttgattgacaccaagtggctcat |
108 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1738952 |
gacatgatcacataagtatttgggatgtatttcctcacaacatcataagctaacttgtaatagttcttgaggctatcttgattgacaccaagtggctcat |
1739051 |
T |
|
| Q |
109 |
tcatcagttctattcctcctaaactttttctattactatatctgtaaacaagttcaattcatgcatgtataaagaaatcagtttcgagtaggtaattcat |
208 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||| |
|
|
| T |
1739052 |
tcatcagctctattcctcctaaactttttctattattatatctgtaaacaagttcaatt----catgtataaagatatcagtttcgagtaggtaattcat |
1739147 |
T |
|
| Q |
209 |
ttggtgaactaagttttcaaacaagagatatgtaaattagtaataaaactactaacttacagatattttcttatgnnnnnnngaaatgagaaatcaatta |
308 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
1739148 |
ttggtgaactaagttttcaaacaagagatatgtaa---agtaataacactactaacttacagatattttcttatgaaaaaaagaaatgagaaatcaatta |
1739244 |
T |
|
| Q |
309 |
catgtgtcataaaatgtttttattttcttgagaaatcaatat |
350 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1739245 |
catgtgtcataaaatgtttttattttcttgagaaatcaatat |
1739286 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 9 - 225
Target Start/End: Original strand, 1717455 - 1717667
Alignment:
| Q |
9 |
gacatcatcacataagtatttgggatgtatttcctcacaacatcataagctgccttgtaatagttcttgaggctatcttgattgacaccaagtggctcat |
108 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||| | ||||||| |||||||||| |||||||||| |
|
|
| T |
1717455 |
gacatgatcacataagtatttgggatgtatttcctcacaacatcataagcttccctgtaatagttcttcaagctatctagattgacacctagtggctcat |
1717554 |
T |
|
| Q |
109 |
tcatcagttctattcctcctaaactttttctattactatatctgtaaacaagttcaattcatgcatgtataaagaaatcagtttcgagtaggtaattcat |
208 |
Q |
| |
|
||||||| ||||||||||||||||||||||||| ||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1717555 |
tcatcagctctattcctcctaaactttttctatgactgtatctgtaaacaagttcaatt----catgtataaagaaatcagtttcgagtaggtaattcat |
1717650 |
T |
|
| Q |
209 |
ttggtgaactaagtttt |
225 |
Q |
| |
|
||||| ||| ||||||| |
|
|
| T |
1717651 |
ttggttaacaaagtttt |
1717667 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 9 - 169
Target Start/End: Original strand, 1754123 - 1754283
Alignment:
| Q |
9 |
gacatcatcacataagtatttgggatgtatttcctcacaacatcataagctgccttgtaatagttcttgaggctatcttgattgacaccaagtggctcat |
108 |
Q |
| |
|
||||| |||||||||| |||||| ||||||||||||| |||||||||| |||||||||| ||||||||||||||| |||||||||| ||||||||| |
|
|
| T |
1754123 |
gacattatcacataagcatttggattgtatttcctcactgcatcataagcctccttgtaatatttcttgaggctatctagattgacaccttgtggctcat |
1754222 |
T |
|
| Q |
109 |
tcatcagttctattcctcctaaactttttctattactatatctgtaaacaagttcaattca |
169 |
Q |
| |
|
|||||| |||||||||||||||||| |||||||| ||| |||| |||| ||||||||| |
|
|
| T |
1754223 |
tcatcaactctattcctcctaaacttggtctattaccatacctgtccacaaattcaattca |
1754283 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 9 - 169
Target Start/End: Original strand, 1748807 - 1748967
Alignment:
| Q |
9 |
gacatcatcacataagtatttgggatgtatttcctcacaacatcataagctgccttgtaatagttcttgaggctatcttgattgacaccaagtggctcat |
108 |
Q |
| |
|
||||| |||||||||| | |||| ||||||| |||||| |||||||||||||||||||||| |||||||| ||||| |||||||||| ||||||||| |
|
|
| T |
1748807 |
gacatgatcacataagcctctgggttgtattttctcacagcatcataagctgccttgtaatacttcttgagactatcaagattgacaccttgtggctcat |
1748906 |
T |
|
| Q |
109 |
tcatcagttctattcctcctaaactttttctattactatatctgtaaacaagttcaattca |
169 |
Q |
| |
|
||||||| |||||||||||||||||| | |||||| ||| |||| |||| ||||||||| |
|
|
| T |
1748907 |
tcatcagctctattcctcctaaacttggtttattaccatacctgtccacaaattcaattca |
1748967 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University