View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18775_high_19 (Length: 300)
Name: NF18775_high_19
Description: NF18775
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18775_high_19 |
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Alignment Details
Target: chr3 (Bit Score: 251; Significance: 1e-139; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 4 - 278
Target Start/End: Original strand, 39293919 - 39294192
Alignment:
| Q |
4 |
aatggaagtgagaacaagttacgctcttagattaaacatggagtttcttttgatttcagggaaaacatttccaacacttgatccacgcacaggggaagtg |
103 |
Q |
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| T |
39293919 |
aatggaagtgagaacaagttacgctcttagattaaacatggagtt-cttttgatttcagggaaaacatttccaacacttgatccacgcacaggggaagtg |
39294017 |
T |
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| Q |
104 |
attgctcacgttgctgaaggtgatgctgaagatattaaccgtgcagtttcagcagctcgtgaggcctttcataatggaccttgacctaaaatgagtgctt |
203 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||| |
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| T |
39294018 |
attgctcacgttgctgaaggtgatgctgaagatattaaccgtgcagtttcagcagcttgcgaggcctttcataatggaccttgacctaaaatgagtgctt |
39294117 |
T |
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| Q |
204 |
atgtaagcgtttccttcagagtgtcctttcttacatgaacttatatgagttttaaaattacgttgatgatgactt |
278 |
Q |
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| T |
39294118 |
atgtaagcatttccttcagcgtgtcctttcttacatgaacttatatgagttttaaaattacgttgatgatgactt |
39294192 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 95 - 160
Target Start/End: Complemental strand, 35212811 - 35212746
Alignment:
| Q |
95 |
ggggaagtgattgctcacgttgctgaaggtgatgctgaagatattaaccgtgcagtttcagcagct |
160 |
Q |
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| T |
35212811 |
ggggaagtgattgctcatgttgctgaaggtgatcaagaagatatcaatcgtgcagtatctgcagct |
35212746 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 250; Significance: 1e-139; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 1 - 278
Target Start/End: Complemental strand, 8357810 - 8357534
Alignment:
| Q |
1 |
ttgaatggaagtgagaacaagttacgctcttagattaaacatggagtttcttttgatttcagggaaaacatttccaacacttgatccacgcacaggggaa |
100 |
Q |
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| T |
8357810 |
ttgaatggaagtgagaacaaattacgctcttagattaaacatggagttt-ttttgatttcagggaaaacatttccaacacttgatccacgcacaggggaa |
8357712 |
T |
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| Q |
101 |
gtgattgctcacgttgctgaaggtgatgctgaagatattaaccgtgcagtttcagcagctcgtgaggcctttcataatggaccttgacctaaaatgagtg |
200 |
Q |
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| T |
8357711 |
gtgattgctcacgttgctgaaggtgatgctgaagatattaaccgtgcagtttcagcagctcgtgaggcctttcataatggaccttggcctaaaatgaatg |
8357612 |
T |
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| Q |
201 |
cttatgtaagcgtttccttcagagtgtcctttcttacatgaacttatatgagttttaaaattacgttgatgatgactt |
278 |
Q |
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| T |
8357611 |
cttatgtaagcatttccttcagagtgtcctttcttacatgaacttatattagttttaaaattacgttgatgatgactt |
8357534 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 218; Significance: 1e-120; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 1 - 278
Target Start/End: Complemental strand, 44000366 - 44000089
Alignment:
| Q |
1 |
ttgaatggaagtgagaacaagttacgctcttagattaaacatggagtttcttttgatttcagggaaaacatttccaacacttgatccacgcacaggggaa |
100 |
Q |
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|||| ||||||||||||||||||| |||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
44000366 |
ttgagtggaagtgagaacaagttaggctcttagattaaacacggagtttcttttgattccagggaaaacatttccaacacttgatccacgcacaggggaa |
44000267 |
T |
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| Q |
101 |
gtgattgctcacgttgctgaaggtgatgctgaagatattaaccgtgcagtttcagcagctcgtgaggcctttcataatggaccttgacctaaaatgagtg |
200 |
Q |
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| T |
44000266 |
gtgattgctcatgttgctgaaggtgatgctgaagatattaaccgtgcagtttcagcagctcgtgaggcctttgataatggaccttggcctaaaatgagtg |
44000167 |
T |
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| Q |
201 |
cttatgtaagcgtttccttcagagtgtcctttcttacatgaacttatatgagttttaaaattacgttgatgatgactt |
278 |
Q |
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||||||||||| |||||| |||||||||||||||| ||||||||| ||| |||||| || ||||||||||||| |||| |
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| T |
44000166 |
cttatgtaagcatttcctgcagagtgtcctttcttgcatgaacttctattagttttcaatttacgttgatgattactt |
44000089 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 59 - 120
Target Start/End: Original strand, 26894376 - 26894437
Alignment:
| Q |
59 |
tcagggaaaacatttccaacacttgatccacgcacaggggaagtgattgctcacgttgctga |
120 |
Q |
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| T |
26894376 |
tcaggtaaaacatttccaacattggatccaaggacaggggaagtgattgctcatgttgctga |
26894437 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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