View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18775_high_25 (Length: 251)
Name: NF18775_high_25
Description: NF18775
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18775_high_25 |
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| [»] chr4 (4 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 175; Significance: 3e-94; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 9 - 251
Target Start/End: Original strand, 6947793 - 6948024
Alignment:
| Q |
9 |
agcataggtaaatctacaatgcagttcttttcatgatgaaaacgaagtgtaacaaaaaatcccatgttaaaatataataatcaacaaaagcagtggcctc |
108 |
Q |
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| T |
6947793 |
agcataggtaaatctacaatgcagttcttt-catgatgaaaacgaagcgtaacataatatcccatgttaaaatataataatcaacaaa-gcagtggcctc |
6947890 |
T |
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| Q |
109 |
ttaactatcttaaccatataaagttttagagactaaaccctagactctaatcagttttcaaaagtgcattgattttcacgacgaacttcctcatcttcct |
208 |
Q |
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| T |
6947891 |
tt---------aaccatataaagttttagagactaaaccctagactctaatcagttttcaaaagtgcattgattttcacaacgaacttcctcatcttcct |
6947981 |
T |
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| Q |
209 |
cgggacggtaagcattcacaatgttgaaaatcttactaatctc |
251 |
Q |
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| T |
6947982 |
tgggacggtaagcattcacaatgttgaaaatcttactaatctc |
6948024 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 9 - 113
Target Start/End: Original strand, 6950264 - 6950367
Alignment:
| Q |
9 |
agcataggtaaatcta-caatgcagttcttttcatgatgaaaacgaagtgtaacaaaaaatcccatgttaaaatataataatcaacaaaagcagtggcct |
107 |
Q |
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||||||| |||||||| |||||||||||||| |||||||||||||||| |||||| || |||||||||||||||||||||| |||| |||||||||| || |
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| T |
6950264 |
agcatagataaatctaacaatgcagttcttt-catgatgaaaacgaagcgtaacataatatcccatgttaaaatataataaacaac-aaagcagtggtct |
6950361 |
T |
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| Q |
108 |
cttaac |
113 |
Q |
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|||||| |
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| T |
6950362 |
cttaac |
6950367 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 144 - 251
Target Start/End: Complemental strand, 11160986 - 11160879
Alignment:
| Q |
144 |
aaccctagactctaatcagttttcaaaagtgcattgattttcacgacgaacttcctcatcttcctcgggacggtaagcattcacaatgttgaaaatctta |
243 |
Q |
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| T |
11160986 |
aaccctagactctaatcattcgtcaaaagcccattgagtttcgctacggacttcctcctcttcctccggagtgtaatcattaataatgttgaaagtctta |
11160887 |
T |
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| Q |
244 |
ctaatctc |
251 |
Q |
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| T |
11160886 |
cgaatctc |
11160879 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 135 - 166
Target Start/End: Original strand, 6950380 - 6950411
Alignment:
| Q |
135 |
tagagactaaaccctagactctaatcagtttt |
166 |
Q |
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| T |
6950380 |
tagagactaaaccctagactctaatcagtttt |
6950411 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 93; Significance: 2e-45; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 116 - 244
Target Start/End: Original strand, 661917 - 662045
Alignment:
| Q |
116 |
tcttaaccatataaagttttagagactaaaccctagactctaatcagttttcaaaagtgcattgattttcacgacgaacttcctcatcttcctcgggacg |
215 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||| || |||| ||| ||||| |
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| T |
661917 |
tcttaaccatataaaattttagagactaaaccctagactctaattagttttcaaaagtgcattgattttcacgacaaacttcatcctcttactccggacg |
662016 |
T |
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| Q |
216 |
gtaagcattcacaatgttgaaaatcttac |
244 |
Q |
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| T |
662017 |
gtaagcatttataatgttgaaaatcttac |
662045 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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