View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18775_high_28 (Length: 227)

Name: NF18775_high_28
Description: NF18775
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18775_high_28
NF18775_high_28
[»] chr3 (16 HSPs)
chr3 (1-214)||(4856523-4856740)
chr3 (1-214)||(4878258-4878475)
chr3 (1-169)||(4852552-4852716)
chr3 (4-218)||(4841906-4842120)
chr3 (1-171)||(4835218-4835384)
chr3 (63-210)||(4842873-4843016)
chr3 (1-95)||(4826476-4826570)
chr3 (63-210)||(4868569-4868712)
chr3 (4-87)||(4871606-4871689)
chr3 (1-172)||(4860821-4860975)
chr3 (1-172)||(4880828-4880982)
chr3 (4-87)||(4845847-4845930)
chr3 (145-218)||(4826595-4826668)
chr3 (101-214)||(4846018-4846131)
chr3 (149-218)||(4837498-4837567)
chr3 (55-95)||(4837426-4837466)
[»] chr7 (1 HSPs)
chr7 (1-66)||(21703749-21703814)


Alignment Details
Target: chr3 (Bit Score: 173; Significance: 4e-93; HSPs: 16)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 1 - 214
Target Start/End: Original strand, 4856523 - 4856740
Alignment:
Q  1 ttagtgttggtgcataatacatatggagtatactggttttatactagttagagactcaatgtgagtttatggtcaatctaagtcatttactaaatgtcaa 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  4856523 ttagtgttggtgcataatacatatggagtatactggttttatactagttagagactcaatgtgagtttatggtcaatctaagtcatgtactaaatgtcaa 4856622  T
Q  101 aattgtgtacgaattgaattattcaacaattttacatgttccttccatgtatttgctactagttgatgatcag----tacctatcgttcaattttccaca 196  Q
    ||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    |||||||| || |||||||||||    
T  4856623 aattgtgtatgaattgaattattcaacaatgttacatgttccttccatgtatttgctactagttgatgatcagtccctacctatcctttaattttccaca 4856722  T
Q  197 caaaaagaccatttagta 214  Q
    ||| ||||||||| ||||    
T  4856723 caacaagaccattcagta 4856740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 1 - 214
Target Start/End: Original strand, 4878258 - 4878475
Alignment:
Q  1 ttagtgttggtgcataatacatatggagtatactggttttatactagttagagactcaatgtgagtttatggtcaatctaagtcatttactaaatgtcaa 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  4878258 ttagtgttggtgcataatacatatggagtatactggttttatactagttagagactcaatgtgagtttatggtcaatctaagtcatgtactaaatgtcaa 4878357  T
Q  101 aattgtgtacgaattgaattattcaacaattttacatgttccttccatgtatttgctactagttgatgatcag----tacctatcgttcaattttccaca 196  Q
    ||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    |||||||| || |||||||||||    
T  4878358 aattgtgtatgaattgaattattcaacaatgttacatgttccttccatgtatttgctactagttgatgatcagtccctacctatcctttaattttccaca 4878457  T
Q  197 caaaaagaccatttagta 214  Q
    ||| ||||||||| ||||    
T  4878458 caacaagaccattcagta 4878475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 1 - 169
Target Start/End: Original strand, 4852552 - 4852716
Alignment:
Q  1 ttagtgttggtgcataatacatatggagtatactggttttatactagttagagactcaatgtgagtttatggtcaatctaagtcatttactaaatgtcaa 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  4852552 ttagtgttggtgcataatacatatggagtatactggttttatactagttagagactcaatgtgagtttatggtcgatctaagtcatttactaaatgtcaa 4852651  T
Q  101 aattgtgtacgaattgaattattcaacaattttacatgttccttccatgtatttgctactagttgatga 169  Q
    ||||||||| |||||||||||||||||||| ||||| |    ||||||||| |||||||||||| ||||    
T  4852652 aattgtgtatgaattgaattattcaacaatgttacaag----ttccatgtagttgctactagtttatga 4852716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 4 - 218
Target Start/End: Original strand, 4841906 - 4842120
Alignment:
Q  4 gtgttggtgcataatacatatggagtatactggttttatactagttagagactcaatgtgagtttatggtcaatctaagtcatttactaaatgtcaaaat 103  Q
    |||||||||||||||||||||||| |  ||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  4841906 gtgttggtgcataatacatatggaattaactggttttatactaattagagactcaatgtgagtttatggtcaatctaagttatttactaaatgtcaaaat 4842005  T
Q  104 tgtgtacgaattgaattattcaacaattttacatgttccttccatgtatttgctactagttgatgatcagtacctatcgttca----attttccacacaa 199  Q
    | |||| |||||||||||||||||||| |||||     ||||||||||||||||||||||||||||||| || ||||| || |    |||||||| |||     
T  4842006 tatgtatgaattgaattattcaacaatgttaca----acttccatgtatttgctactagttgatgatcattaactatccttaatttcattttccatacag 4842101  T
Q  200 aaagaccatttagtattat 218  Q
     ||||||||||||||||||    
T  4842102 caagaccatttagtattat 4842120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 1 - 171
Target Start/End: Original strand, 4835218 - 4835384
Alignment:
Q  1 ttagtgttggtgcataatacatatggagtatactggttttatactagttagagactcaatgtgagtttatggtcaatctaagtcatttactaaatgtcaa 100  Q
    |||||||||||||||||||||||||||||  ||||||||||||||| |||||||||||| |||||||||||||||||| |||||||||||||||||||||    
T  4835218 ttagtgttggtgcataatacatatggagttaactggttttatactaattagagactcaaagtgagtttatggtcaatcaaagtcatttactaaatgtcaa 4835317  T
Q  101 aattgtgtacgaattgaattattcaacaattttacatgttccttccatgtatttgctactagttgatgatc 171  Q
    ||||||||| |||||||||||||||||||| ||||| |     |||||||||||||||||| |||||||||    
T  4835318 aattgtgtatgaattgaattattcaacaatgttacaag----gtccatgtatttgctactacttgatgatc 4835384  T

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Target: chr3; HSP #6
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 63 - 210
Target Start/End: Original strand, 4842873 - 4843016
Alignment:
Q  63 gagtttatggtcaatctaagtcatttactaaatgtcaaaattgtgtacgaattgaattattcaacaattttacatgttccttccatgtatttgctactag 162  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||| |     |||||||||||||||||||    
T  4842873 gagtttatggtcaatctaagtcatttactaaatgtcaaaattgtgtatgaattgaattattcaacaatgttacaag----ctccatgtatttgctactag 4842968  T
Q  163 ttgatgatcagtacctatcgttcaattttccacacaaaaagaccattt 210  Q
    |||||||||| || ||||| ||  |||||||| ||||  |||||||||    
T  4842969 ttgatgatcactaactatcctttcattttccatacaactagaccattt 4843016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 1 - 95
Target Start/End: Original strand, 4826476 - 4826570
Alignment:
Q  1 ttagtgttggtgcataatacatatggagtatactggttttatactagttagagactcaatgtgagtttatggtcaatctaagtcatttactaaat 95  Q
    |||||||||||||||||||||||  ||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4826476 ttagtgttggtgcataatacatagagagttaactggttttatactagttagagactcaatgtgagtttatggtcaatctaagtcatttactaaat 4826570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 63 - 210
Target Start/End: Original strand, 4868569 - 4868712
Alignment:
Q  63 gagtttatggtcaatctaagtcatttactaaatgtcaaaattgtgtacgaattgaattattcaacaattttacatgttccttccatgtatttgctactag 162  Q
    |||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||| ||||| |     |||||||||||||||||||    
T  4868569 gagtttatggtcaatctaagtcatttactaaatgtcaaaattatgtatgaattgaattattcaacaatgttacaag----ctccatgtatttgctactag 4868664  T
Q  163 ttgatgatcagtacctatcgttcaattttccacacaaaaagaccattt 210  Q
    |||||||||| || ||||| ||  |||||||| ||||  |||||||||    
T  4868665 ttgatgatcactaactatcctttcattttccatacaactagaccattt 4868712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 4 - 87
Target Start/End: Original strand, 4871606 - 4871689
Alignment:
Q  4 gtgttggtgcataatacatatggagtatactggttttatactagttagagactcaatgtgagtttatggtcaatctaagtcatt 87  Q
    ||||||||||||||||||||||||||  ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4871606 gtgttggtgcataatacatatggagttaactggctttatactagttagagactcaatgtgagtttatggtcaatctaagtcatt 4871689  T

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Target: chr3; HSP #10
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 1 - 172
Target Start/End: Original strand, 4860821 - 4860975
Alignment:
Q  1 ttagtgttggtgcataatacatatggagt-atactggttttatactagttagagactcaatgtgagtttatggtcaatctaagtcatttactaaatgtca 99  Q
    ||||||||||||||||||||||| ||||| | ||||||||||||||||||||||||||||||||||| ||| |||||||              || || |    
T  4860821 ttagtgttggtgcataatacatagggagttaaactggttttatactagttagagactcaatgtgagtctatcgtcaatc--------------aaagtta 4860906  T
Q  100 aaattgtgtacgaattgaattattcaacaattttacatgttccttccatgtatttgctactagttgatgatca 172  Q
    |||||||| |||||||||||||||||||||| ||||| |    ||||||||||||| |||||| |||||||||    
T  4860907 aaattgtgcacgaattgaattattcaacaatgttacaag----ttccatgtatttgatactagctgatgatca 4860975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 1 - 172
Target Start/End: Original strand, 4880828 - 4880982
Alignment:
Q  1 ttagtgttggtgcataatacatatggagt-atactggttttatactagttagagactcaatgtgagtttatggtcaatctaagtcatttactaaatgtca 99  Q
    ||||||||||||||||||||||| ||||| | ||||||||||||||||||||||||||||||||||| ||| |||||||              || || |    
T  4880828 ttagtgttggtgcataatacatagggagttaaactggttttatactagttagagactcaatgtgagtctatcgtcaatc--------------aaagtta 4880913  T
Q  100 aaattgtgtacgaattgaattattcaacaattttacatgttccttccatgtatttgctactagttgatgatca 172  Q
    |||||||| |||||||||||||||||||||| ||||| |    ||||||||||||| |||||| |||||||||    
T  4880914 aaattgtgcacgaattgaattattcaacaatgttacaag----ttccatgtatttgatactagctgatgatca 4880982  T

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Target: chr3; HSP #12
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 4 - 87
Target Start/End: Original strand, 4845847 - 4845930
Alignment:
Q  4 gtgttggtgcataatacatatggagtatactggttttatactagttagagactcaatgtgagtttatggtcaatctaagtcatt 87  Q
    |||||||||||||||||||| | |||  ||||| ||||||||||||||||||||||||||| ||| ||||||||||||||||||    
T  4845847 gtgttggtgcataatacataggtagttaactggctttatactagttagagactcaatgtgattttttggtcaatctaagtcatt 4845930  T

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Target: chr3; HSP #13
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 145 - 218
Target Start/End: Original strand, 4826595 - 4826668
Alignment:
Q  145 ccatgtatttgctactagttgatgatcagtacctatcgttcaattttccacacaaaaagaccatttagtattat 218  Q
    |||||||||||||||| |||||||||||||||||||| ||  ||||||||||||| ||||||||||||||||||    
T  4826595 ccatgtatttgctacttgttgatgatcagtacctatcctttcattttccacacaacaagaccatttagtattat 4826668  T

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Target: chr3; HSP #14
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 101 - 214
Target Start/End: Original strand, 4846018 - 4846131
Alignment:
Q  101 aattgtgtacgaattgaattattcaacaattttacatgttccttccatgtatttgctactagttgatgatcag----tacctatcgttcaattttccaca 196  Q
    |||||| || ||||||||||||| |||||| |||||||    |||||||||||||| |||||||||||||  |    |||||||| || |||||||||||    
T  4846018 aattgtttatgaattgaattattgaacaatgttacatg----ttccatgtatttgcaactagttgatgattggtagctacctatcctttaattttccaca 4846113  T
Q  197 caaaaagaccatttagta 214  Q
    ||| ||||||||| ||||    
T  4846114 caacaagaccattcagta 4846131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 149 - 218
Target Start/End: Original strand, 4837498 - 4837567
Alignment:
Q  149 gtatttgctactagttgatgatcagtacctatcgttcaattttccacacaaaaagaccatttagtattat 218  Q
    |||||||||| |  ||||||||||||| ||||| ||  ||||||||||||| ||||||||||||||||||    
T  4837498 gtatttgctagttattgatgatcagtagctatcctttcattttccacacaacaagaccatttagtattat 4837567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 55 - 95
Target Start/End: Original strand, 4837426 - 4837466
Alignment:
Q  55 ctcaatgtgagtttatggtcaatctaagtcatttactaaat 95  Q
    ||||||||||||||||||||||| |||||||||||||||||    
T  4837426 ctcaatgtgagtttatggtcaatataagtcatttactaaat 4837466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 21703814 - 21703749
Alignment:
Q  1 ttagtgttggtgcataatacatatggagtatactggttttatactagttagagactcaatgtgagt 66  Q
    ||||||||||||||||| ||||| | |||  || ||||||||||||||||||||||||||| ||||    
T  21703814 ttagtgttggtgcataagacataggaagttaaccggttttatactagttagagactcaatgggagt 21703749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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