View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18775_high_29 (Length: 219)
Name: NF18775_high_29
Description: NF18775
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18775_high_29 |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 211; Significance: 1e-116; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 1 - 219
Target Start/End: Original strand, 36290816 - 36291034
Alignment:
| Q |
1 |
atctccaacaacaacaattgttggaagctgaattccttctttggcaatgttgagacgccttagattctcaagggcatcgagaactggacgtattttttca |
100 |
Q |
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| T |
36290816 |
atctccaacaacaacaattgttggaagctgaattccttctttggcaatgttgagacgccttagattctcaagggcatcgagaactggacgtattttttca |
36290915 |
T |
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| Q |
101 |
ttgtatgatgaaacaattggtgcaacaacagaaatgggtagagcttgctcaacatggactaatgaaagtgatgaatcatcacgttggttagcactaacag |
200 |
Q |
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| T |
36290916 |
ttgtatgatgaaacaattggtgcaacaacagaaatgggtagagcttgctcaacatggactaatgaaagtgatgattcatcacgttggttagcactaacag |
36291015 |
T |
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| Q |
201 |
atgattttgtagtggttct |
219 |
Q |
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| T |
36291016 |
aagattttgtagtggttct |
36291034 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 1 - 125
Target Start/End: Original strand, 36313299 - 36313423
Alignment:
| Q |
1 |
atctccaacaacaacaattgttggaagctgaattccttctttggcaatgttgagacgccttagattctcaagggcatcgagaactggacgtattttttca |
100 |
Q |
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|||||||||||||||||| ||||||||||| ||||| ||||||||||||||||||||||||||||| ||||| ||||| || ||||||||||| || ||| |
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| T |
36313299 |
atctccaacaacaacaatggttggaagctggattccctctttggcaatgttgagacgccttagattttcaagagcatcaagcactggacgtatcttctca |
36313398 |
T |
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| Q |
101 |
ttgtatgatgaaacaattggtgcaa |
125 |
Q |
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| T |
36313399 |
ttataagaagatacaattggtgcaa |
36313423 |
T |
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