View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18775_high_5 (Length: 451)
Name: NF18775_high_5
Description: NF18775
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18775_high_5 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 368; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 368; E-Value: 0
Query Start/End: Original strand, 18 - 451
Target Start/End: Original strand, 36842778 - 36843223
Alignment:
| Q |
18 |
tggatactcattaccaccaccttgaacttgatccatttcaacaatatatatgattgaattttcctaagctacataactatttattttttcagaaaatgga |
117 |
Q |
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| T |
36842778 |
tggatactcattaccaccaccttgaacttgatccatttcaacaatatatatgattgaattttcctaagctacataactatttattttttcagaaaatgga |
36842877 |
T |
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| Q |
118 |
aataaaattctagaggcataataatggttttcaaaaacttatgtctcattnnnnnnngggagattaaggagaagaatgcaatgttaagaaatgaattatg |
217 |
Q |
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| T |
36842878 |
aataaaattctagaggcataataatggttttcaaaaacttatgtctcattaaaaaaagggagattaaggagaagaatgcaatgataagaaatgaattatg |
36842977 |
T |
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| Q |
218 |
gaaaagaaactaaatgatgatttagatggattgagattgagataacaacaaggttaaatcaaatttcaattctgcagacagaggaaagttcaacaccaca |
317 |
Q |
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| T |
36842978 |
gaaaagaaactaaatgatgatttagatggattgagattgagatagcaacaaggttaaatcaaatttcaattctgcagacagaggaaagttcaacaccaca |
36843077 |
T |
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| Q |
318 |
tccattggaagcaagagagagaggtttggtaggccgaaaatggtgtgaggaattgtaagtttggtattcaattatc------------tttcatttccaa |
405 |
Q |
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| T |
36843078 |
tccattggaagcaagagagagaggtttggcaggccgaaaatggtgtgaggaattgtaagtttggtattcaattatctctcatttgatttttcatttccaa |
36843177 |
T |
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| Q |
406 |
aattggcaaattcaaaacgaaaaatatgcatgagagaaattattaa |
451 |
Q |
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| T |
36843178 |
aattggcaaattcaaaacgaaaaatatgcatgagagaaagtattaa |
36843223 |
T |
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