View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18775_high_6 (Length: 425)
Name: NF18775_high_6
Description: NF18775
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18775_high_6 |
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Alignment Details
Target: chr4 (Bit Score: 385; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 385; E-Value: 0
Query Start/End: Original strand, 20 - 415
Target Start/End: Original strand, 51226798 - 51227194
Alignment:
| Q |
20 |
gcgtctatgttgttcacatcttatcttatatcaaaaagtttaaagtcctatgctagcttatggttgacataccgacatga-tgaattgatgatgaaatat |
118 |
Q |
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| T |
51226798 |
gcgtctatgttgttcacatcttatcttatatcaaaaagtttaaaggcctatgctagcttatggttgacataccgacatgaatgaattgatgatgaaatat |
51226897 |
T |
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| Q |
119 |
aagcttctaacaaaacaggtaaatgtattcctcaagtaataagaatgatttaaaaagaagagtgcagagtgaaaaataccgtataaggtaatgacttttc |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51226898 |
aagcttctaacaaaacaggtaaatgtattcctcaagtaataagaatgatttaaaaagaagagtgcagagtgaaaaataccgtataaggtaatgacttttc |
51226997 |
T |
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| Q |
219 |
aaatgaggaaccataattcctaacccaagtacaaaatttgatgcctatttttagctagtagggatccgtataaaaatgatgcagatagctgctcccaaca |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51226998 |
aaatgaggaaccataattcctaacccaagtacaaaatttgatgcctatttttagctagtagggatccgtataaaaatgatgcagatagctgctcccaaca |
51227097 |
T |
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| Q |
319 |
taccaagcttccaacatgacagtagaaaaacattagtagtaatttgttattggttcatttaatatgcaaatgttagtcgttagtacgttatgttcat |
415 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51227098 |
taccaagcttccaacatgacagtagaaaaacattagtagtaatttgttattggttcatttaatatgcaaatgttagtcgttagtacgttatgttcat |
51227194 |
T |
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