View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18775_low_10 (Length: 416)

Name: NF18775_low_10
Description: NF18775
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18775_low_10
NF18775_low_10
[»] chr6 (3 HSPs)
chr6 (290-416)||(30128940-30129066)
chr6 (188-293)||(30129785-30129890)
chr6 (147-180)||(30129857-30129890)


Alignment Details
Target: chr6 (Bit Score: 127; Significance: 2e-65; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 290 - 416
Target Start/End: Complemental strand, 30129066 - 30128940
Alignment:
Q  290 atgacaatgcataaagcaactaatccacaaaccatggatttctcatgaagtcgcttatgttcacctaaccaaaacttttaccttgtcaatcaagccttaa 389  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30129066 atgacaatgcataaagcaactaatccacaaaccatggatttctcatgaagtcgcttatgttcacctaaccaaaacttttaccttgtcaatcaagccttaa 30128967  T
Q  390 tcaattgggagctacttatctatttaa 416  Q
    |||||||||||||||||||||||||||    
T  30128966 tcaattgggagctacttatctatttaa 30128940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 94; E-Value: 9e-46
Query Start/End: Original strand, 188 - 293
Target Start/End: Complemental strand, 30129890 - 30129785
Alignment:
Q  188 atataaatgtataattattgctgaaacctttatttaattttggttttaggaaagtaacagcagatctatttaaaaattgagtaatagtcaataataccat 287  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||    
T  30129890 atataaatgtataattattgttgaaacctttatttaattttggttttaggaaagtaacagcagatctatgtaaaaattgagtaatagtcaacaataccat 30129791  T
Q  288 ggatga 293  Q
    ||||||    
T  30129790 ggatga 30129785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 147 - 180
Target Start/End: Complemental strand, 30129890 - 30129857
Alignment:
Q  147 atataaatgtataattattgttgaaacctttatt 180  Q
    ||||||||||||||||||||||||||||||||||    
T  30129890 atataaatgtataattattgttgaaacctttatt 30129857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University