View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18775_low_12 (Length: 381)
Name: NF18775_low_12
Description: NF18775
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18775_low_12 |
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Alignment Details
Target: chr2 (Bit Score: 304; Significance: 1e-171; HSPs: 13)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 41 - 377
Target Start/End: Complemental strand, 10493346 - 10493011
Alignment:
| Q |
41 |
ccattggagttttgcatgcatattatttggttttacatttagcaaaagatttatcagatgtttttgttttgacaaatagtttatcaacatattgtcttga |
140 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10493346 |
ccattggagttttgcatgcatattatttggttttacatttagcaaa-gatttatcagatgtttttgttttgacaaatagtttatcaacatattgtcttga |
10493248 |
T |
|
| Q |
141 |
agtgaggatgttgaagtttgaacttcctaaatgtgtctcaactnnnnnnngcacatacatttcattttgtaatggaatggaatgttgcatgggtctcaac |
240 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10493247 |
agtgaggatgttgaagtttgaacttcctaaatgtgtctcaactaaaaaaagcacatacatttcattttgtaatggaatggaatgttgcatgggtctcaac |
10493148 |
T |
|
| Q |
241 |
taagataccataatatagcatgtgaaacataatataaatcctttggaaaaccaactttttgtccgtgcaccactgtaggcacgtgcattttcagatagtg |
340 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
10493147 |
taagataccataatatagcatgtgaaacataatataaatcctttggaaaaccaactttttgtccttgcaccactgtaggcacgtgcattttcagatagtg |
10493048 |
T |
|
| Q |
341 |
tgatatacgaaaacctgttgttacttcgctctcactc |
377 |
Q |
| |
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||||||||||||||||||||||||||||||||||||| |
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| T |
10493047 |
tgatatacgaaaacctgttgttacttcgctctcactc |
10493011 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 182; E-Value: 3e-98
Query Start/End: Original strand, 47 - 366
Target Start/End: Original strand, 7481824 - 7482143
Alignment:
| Q |
47 |
gagttttgcatgcatattatttggttttacatttagcaaaagatttatcagatgttttt-gttttgacaaatagtttatcaacatattgtcttgaagtg- |
144 |
Q |
| |
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||||||||| |||||| ||| || |||| ||||||||||| |||||||||||||||||| ||||||||||||| ||||||||||||||||||||| ||| |
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| T |
7481824 |
gagttttgcttgcataatatgtg-ttttgcatttagcaaa-gatttatcagatgttttttgttttgacaaataatttatcaacatattgtcttgacgtgt |
7481921 |
T |
|
| Q |
145 |
--aggatgttgaagtttgaacttcctaaatgtgtctcaactnnnnnnngcacatacatttcattttgtaatggaatggaatgttgcatgggtctcaacta |
242 |
Q |
| |
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||||||||||||||||| ||||||||||||||||||||| |||||||| | | ||||||||||||||| |||| ||||||||||||||| | |
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| T |
7481922 |
tgaggatgttgaagtttgagcttcctaaatgtgtctcaactaaaaaaagcacatacgtattattttgtaatggaatagaattttgcatgggtctcaaaga |
7482021 |
T |
|
| Q |
243 |
agataccataatatagcatgtgaaacataatataaatcctttggaaaaccaactttttgtccgtgcaccactgtaggcacgtgcattttcagatagtgtg |
342 |
Q |
| |
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||||||||||||||||||||| |||||||||||||||| |||||||||||||| ||||||| ||||||||||||||||||||||| ||||||||||||| |
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| T |
7482022 |
agataccataatatagcatgt--aacataatataaatccattggaaaaccaactctttgtccttgcaccactgtaggcacgtgcatgttcagatagtgtg |
7482119 |
T |
|
| Q |
343 |
atatacgaaaacctgttgttactt |
366 |
Q |
| |
|
|||||||||||||||||||||||| |
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|
| T |
7482120 |
atatacgaaaacctgttgttactt |
7482143 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 158; E-Value: 5e-84
Query Start/End: Original strand, 46 - 367
Target Start/End: Complemental strand, 10489269 - 10488946
Alignment:
| Q |
46 |
ggagttttgcatgcatattatttggttttacatttagcaaaagatttatcagatgtttttgttttgacaaatagtttatcaacatattgtcttgaagtg- |
144 |
Q |
| |
|
||||||| |||||| ||||||||| |||||||||||| || ||||| | ||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
10489269 |
ggagtttggcatgctaattatttggctttacatttagcgaa-gatttcaaatatgtttttgttttgacaaatagtttatcaacatattgtcttaaagtgt |
10489171 |
T |
|
| Q |
145 |
--aggatgttgaagtttgaacttcctaaatgtgtctcaactnnnnnnngcacatacatttcattttgtaatggaatggaatgttgcatgggtctcaacta |
242 |
Q |
| |
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||||||||||||||||| | ||||||||||||||||||| |||||||||| || ||||||||||| || |||||||||| | |||| | || |
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| T |
10489170 |
tgaggatgttgaagtttgagcatcctaaatgtgtctcaactaaaaaaagcacatacatgtccttttgtaatggtatagaatgttgcacgtgtcttgaata |
10489071 |
T |
|
| Q |
243 |
agataccataatatagcatgtgaaacataatataaatcctttggaaaaccaactttttgtccgtgcaccactgtaggcacgtgcattttcagatagtgtg |
342 |
Q |
| |
|
|||||||||| ||||| ||||||||||||||||||||| ||||||||||| | ||||||||| ||||||||||||||||| ||||||||| ||||||||| |
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| T |
10489070 |
agataccatattatagtatgtgaaacataatataaatcatttggaaaacccattttttgtccttgcaccactgtaggcacttgcattttcggatagtgtg |
10488971 |
T |
|
| Q |
343 |
atatacgaaaacctgttgttacttc |
367 |
Q |
| |
|
|||||||||||| ||||||||||| |
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|
| T |
10488970 |
atatacgaaaacaagttgttacttc |
10488946 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 143; E-Value: 5e-75
Query Start/End: Original strand, 46 - 371
Target Start/End: Original strand, 7478232 - 7478550
Alignment:
| Q |
46 |
ggagttttgcatgcatattatttggttttacatttagcaaaagatttatcagatgtttttgttttgacaaatagtttatcaacatattgtcttgaagtg- |
144 |
Q |
| |
|
||||||||||||||||||||| | ||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
7478232 |
ggagttttgcatgcatattatgtagttttacatttagcaaa----------gattcttttgttttgacaaatagtttatcaacatattgtcttcaagtgt |
7478321 |
T |
|
| Q |
145 |
--aggatgttgaagtttgaacttcctaaatgtgtctcaactnnnnnnngcacatacatttcattttgtaatggaatggaatgttgcatgggtctcaacta |
242 |
Q |
| |
|
||||||||||||||||| | |||||||||||| |||||| |||||||||| || ||||||||| | || ||||||||| || ||||| | || |
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|
| T |
7478322 |
tgaggatgttgaagtttgagcatcctaaatgtgtgtcaactaaaaacagcacatacatgtccttttgtaattgtatagaatgttgcttgtgtctcgaata |
7478421 |
T |
|
| Q |
243 |
agataccataatatagcatgtgaaacataatataaatcctttggaaaaccaactttttgtccgtgcaccactgtaggcacgtgcattttcagatagtgtg |
342 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||| |||||||| | | |||||||| ||||||||||||||||| ||||||||| ||||||||| |
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| T |
7478422 |
agataccataatatagtatgtgaaacataatataaatcatttggaaactcgattttttgtctttgcaccactgtaggcacatgcattttctgatagtgtg |
7478521 |
T |
|
| Q |
343 |
atatacgaaaacctgttgttacttcgctc |
371 |
Q |
| |
|
||||||||||||| |||||||| |||||| |
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| T |
7478522 |
atatacgaaaaccagttgttacatcgctc |
7478550 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 104; E-Value: 9e-52
Query Start/End: Original strand, 48 - 279
Target Start/End: Complemental strand, 10475044 - 10474811
Alignment:
| Q |
48 |
agttttgcatgcatattatttggttttacatttagcaaaagatttatcagatgtttttgttttgacaaatagtttatcaacatattgtcttgaagtg--- |
144 |
Q |
| |
|
|||||||||| | ||||||||||||||| ||||||| | ||| | || ||||||||||||||| ||||||||||||||||||||||||| ||||| |
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|
| T |
10475044 |
agttttgcatactaattatttggttttacgtttagcata-gatgtgtcctatgtttttgttttgataaatagtttatcaacatattgtcttcaagtgttg |
10474946 |
T |
|
| Q |
145 |
aggatgttgaagtttgaacttcctaaatgtgtctcaactnnnnnnngcacatacatttcattttgtaatggaatggaatgttgcatgggtctcaactaag |
244 |
Q |
| |
|
||||||||||||||||| | ||||||| ||||||||||| |||||||||| ||||||| |||||| || |||||||||||||||||| | |||| |
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|
| T |
10474945 |
aggatgttgaagtttgagcatcctaaacgtgtctcaactaaaaatagcacatacatgtcattttctaatggtatagaatgttgcatgggtctcgaataag |
10474846 |
T |
|
| Q |
245 |
ataccataatatagcatgtgaaacataatataaat |
279 |
Q |
| |
|
||| |||||||||| |||||||||||||||||||| |
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|
| T |
10474845 |
atagcataatatagtatgtgaaacataatataaat |
10474811 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 46 - 161
Target Start/End: Complemental strand, 10507898 - 10507781
Alignment:
| Q |
46 |
ggagttttgcatgcatattatttggttttacatttagcaaaagatttatcagatgtttttgttttgacaaatagtttatcaacatattgtcttgaagt-- |
143 |
Q |
| |
|
|||||||||||| | ||||||| ||||||||||||||||| ||||| ||| ||||||||||||| ||||||||||||||||||||||||||||| || |
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|
| T |
10507898 |
ggagttttgcatactaattattttgttttacatttagcaaa-gatttctcatatgtttttgttttaacaaatagtttatcaacatattgtcttgaggtgt |
10507800 |
T |
|
| Q |
144 |
-gaggatgttgaagtttga |
161 |
Q |
| |
|
|||||||||||||||||| |
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|
| T |
10507799 |
agaggatgttgaagtttga |
10507781 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 62 - 131
Target Start/End: Complemental strand, 10463833 - 10463766
Alignment:
| Q |
62 |
attatttggttttacatttagcaaaagatttatcagatgtttttgttttgacaaatagtttatcaacata |
131 |
Q |
| |
|
||||||||||||||||||||||||| ||| ||| ||||||||||||||| ||||||||||||||||| |
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|
| T |
10463833 |
attatttggttttacatttagcaaagtttttctca--tgtttttgttttgactaatagtttatcaacata |
10463766 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 42 - 138
Target Start/End: Complemental strand, 10545562 - 10545467
Alignment:
| Q |
42 |
cattggagttttgcatgcatattatttggttttacatttagcaaaagatttatcag-atgtttttgttttgacaaatagtttatcaacatattgtctt |
138 |
Q |
| |
|
||||||||||||| || | |||||||||||||||||| || |||| | |||| ||| ||||||||||||||||||||||||||||||||||||| |
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|
| T |
10545562 |
cattggagttttgaatactaattatttggttttacattgagaaaaaaaa--atcaatatgattttgttttgacaaatagtttatcaacatattgtctt |
10545467 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 285 - 369
Target Start/End: Complemental strand, 10518743 - 10518655
Alignment:
| Q |
285 |
ggaaaaccaactttttgtccgtgcaccactgtaggcac--gtgcattttcagata--gtgtgatatacgaaaacctgttgttacttcgc |
369 |
Q |
| |
|
|||||||| ||||||||||| || ||||||| ||||| ||||||||||| ||| |||||||||| ||||||| ||||||||||||| |
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|
| T |
10518743 |
ggaaaacccactttttgtccatgtaccactgaaggcagatgtgcattttcaaatatagtgtgatatatgaaaaccagttgttacttcgc |
10518655 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 221 - 276
Target Start/End: Complemental strand, 10545418 - 10545364
Alignment:
| Q |
221 |
aatgttgcatgggtctcaactaagataccataatatagcatgtgaaacataatata |
276 |
Q |
| |
|
|||||||||||||||||| || ||||||||||||||| |||| |||||||||||| |
|
|
| T |
10545418 |
aatgttgcatgggtctcagata-gataccataatatagtatgtaaaacataatata |
10545364 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 335 - 369
Target Start/End: Complemental strand, 10474330 - 10474296
Alignment:
| Q |
335 |
atagtgtgatatacgaaaacctgttgttacttcgc |
369 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||| |
|
|
| T |
10474330 |
atagtgtgatatacgaaaaccagttgttacttcgc |
10474296 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 335 - 367
Target Start/End: Complemental strand, 10545307 - 10545275
Alignment:
| Q |
335 |
atagtgtgatatacgaaaacctgttgttacttc |
367 |
Q |
| |
|
||||||||||||||||||||| ||||||||||| |
|
|
| T |
10545307 |
atagtgtgatatacgaaaaccagttgttacttc |
10545275 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 62 - 126
Target Start/End: Complemental strand, 10863351 - 10863288
Alignment:
| Q |
62 |
attatttggttttacatttagcaaaagatttatcagatgtttttgttttgacaaatagtttatca |
126 |
Q |
| |
|
|||||||||||||| ||||||| || ||||| ||| ||||| | |||||||||||||||||||| |
|
|
| T |
10863351 |
attatttggttttatatttagcgaa-gatttgtcatatgttctacttttgacaaatagtttatca |
10863288 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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